Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14f19
         (413 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   1.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   2.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   9.6  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    20   9.6  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 298 YYDQCADIAKPDRLPDDDGACCHHFIFDAQR 390
           +Y++ A   +PDR   D G      +FD  R
Sbjct: 246 HYERRATPPQPDRTSKDQGTIGESEVFDTTR 276


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
 Frame = -3

Query: 369 MVTARTVVIGKTVGFGNVGTLII-VIKKFILYSILVH-FQMFIVNYCKRGRTHAALHLCV 196
           M+    V+      +  +  +++  I   + Y I  + F+  + +YC    TH    +  
Sbjct: 316 MIAGIVVISAGADAYPPLAAIVLGAIGSIVFYIISRYVFRSALEDYCNIVATHLVCGILG 375

Query: 195 DLYVGGVHVKENKVINHYLLSFCASGRCL 109
            + V   +V+E+  +   LL+F     CL
Sbjct: 376 SILVPFFYVQEDDDVKLVLLNFGWQMICL 404


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 109 RTNMAMTHSLTSLYFP 62
           +TN+ +TH+ + LY P
Sbjct: 156 QTNVVVTHNGSCLYVP 171


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 109 RTNMAMTHSLTSLYFP 62
           +TN+ +TH+ + LY P
Sbjct: 156 QTNVVVTHNGSCLYVP 171


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 287 NFFITMINVPTLPN 328
           NFFITM ++  L N
Sbjct: 381 NFFITMFDLDFLTN 394


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
          finger domain-Z1 isoform protein.
          Length = 111

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 24 QHDKNQQSRAE 56
          QH KN+Q R E
Sbjct: 58 QHSKNEQQRKE 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,491
Number of Sequences: 438
Number of extensions: 2358
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)