Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14f18
         (427 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    26   0.15 
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   4.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.6  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 26.2 bits (55), Expect = 0.15
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 59  SVSIYRFMALSQFLRRNLVSIVFPTI--SITLIFLDW 163
           +  IY+ ++LS  L+RN+   VF T   SI ++ L W
Sbjct: 224 ATGIYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSW 260


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 425 YCTLNLFATNLHNYH 381
           YC+ N   T+++ YH
Sbjct: 45  YCSRNSLMTHIYTYH 59


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +1

Query: 124 LSHHKHYAYFS*LEPHSQVESSTDQS 201
           L+  +HYA ++ + PH+      + S
Sbjct: 767 LTEAEHYALYTAMAPHATASEFDEMS 792


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,894
Number of Sequences: 438
Number of extensions: 2612
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)