Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14f14
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    27   0.16 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    27   0.16 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   1.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.6  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   6.1  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   6.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   8.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   8.1  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = -1

Query: 228 VGVLGWEAPGSILVHVAGRCHR---LVYFVHETIQLFLLNRS 112
           V  L W   G  +    G C +   ++YF+   +Q +L+N S
Sbjct: 257 VDQLSWLGSGQYISDFVGSCRKTDQILYFIRGCLQTYLINAS 298


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = -1

Query: 228 VGVLGWEAPGSILVHVAGRCHR---LVYFVHETIQLFLLNRS 112
           V  L W   G  +    G C +   ++YF+   +Q +L+N S
Sbjct: 295 VDQLSWLGSGQYISDFVGSCRKTDQILYFIRGCLQTYLINAS 336


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 222 VLGWEAPGSILVHVAGRCHRLVY 154
           +LGW  P   L+H+    H LVY
Sbjct: 20  LLGWNVPAEELIHIPE--HWLVY 40


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +3

Query: 210 PNRELRRQYQRRICQNNQEPNRETQELRPQGLQSGSVSR*EADNPEI 350
           P  + + Q Q++  Q  Q+P ++ Q+ + Q  Q       +  NP I
Sbjct: 822 PQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQRGPMTNDDFNPNI 868


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +1

Query: 190 ENRPGCFPTENSDGSTSEESVKITRNLTEKRKNYVRRVSSRVA 318
           E     +  ENS     E S + +R+ TE+ ++  R++ S ++
Sbjct: 277 EREQKSYKNENSYRKYRETSKERSRDRTERERSKERKIISSLS 319


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +1

Query: 190 ENRPGCFPTENSDGSTSEESVKITRNLTEKRKNYVRRVSSRVA 318
           E     +  ENS     E S + +R+ TE+ ++  R++ S ++
Sbjct: 282 EREQKSYKNENSYRKYRETSKERSRDKTERERSKERKIISSLS 324


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 243 FAGTAVGVLGW 211
           FAG+ V VLGW
Sbjct: 287 FAGSDVTVLGW 297


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
 Frame = +1

Query: 343 QKYRHQTSV------CSYKPDAPENQY 405
           Q Y H  SV        YKPD  E +Y
Sbjct: 162 QSYHHMDSVEYKPEIMEYKPDVEEQRY 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.127    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,164
Number of Sequences: 438
Number of extensions: 3273
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)