Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14f12
(342 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M17886-1|AAA36471.1| 114|Homo sapiens protein ( Human acidic ri... 58 5e-09
CR450339-1|CAG29335.1| 114|Homo sapiens RPLP1 protein. 58 5e-09
BC007590-1|AAH07590.1| 114|Homo sapiens ribosomal protein, larg... 58 5e-09
BC003369-1|AAH03369.1| 114|Homo sapiens ribosomal protein, larg... 58 5e-09
AB061836-1|BAB79474.1| 114|Homo sapiens ribosomal protein P1 pr... 58 5e-09
CR542209-1|CAG47005.1| 114|Homo sapiens RPLP1 protein. 56 2e-08
AY303789-1|AAP68820.1| 113|Homo sapiens acidic ribosomal phosph... 56 3e-08
M17887-1|AAA36472.1| 115|Homo sapiens protein ( Human acidic ri... 29 5.0
CR542248-1|CAG47044.1| 115|Homo sapiens RPLP2 protein. 29 5.0
CR542212-1|CAG47008.1| 115|Homo sapiens RPLP2 protein. 29 5.0
BC062314-1|AAH62314.1| 115|Homo sapiens ribosomal protein, larg... 29 5.0
BC007573-1|AAH07573.1| 115|Homo sapiens ribosomal protein, larg... 29 5.0
BC005920-1|AAH05920.1| 115|Homo sapiens ribosomal protein, larg... 29 5.0
BC005354-1|AAH05354.1| 115|Homo sapiens ribosomal protein, larg... 29 5.0
AB061837-1|BAB79475.1| 115|Homo sapiens ribosomal protein P2 pr... 29 5.0
>M17886-1|AAA36471.1| 114|Homo sapiens protein ( Human acidic
ribosomal phosphoprotein P1 mRNA, complete cds. ).
Length = 114
Score = 58.4 bits (135), Expect = 5e-09
Identities = 32/81 (39%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +3
Query: 3 AAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXXXXXXXXXXXXX 176
AA V+VEP+WPGLFAKAL +N+ LI N+G+G
Sbjct: 34 AAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKK 93
Query: 177 XXXXXXXXXXSDDDMGFGLFD 239
SDDDMGFGLFD
Sbjct: 94 VEAKKEESEESDDDMGFGLFD 114
>CR450339-1|CAG29335.1| 114|Homo sapiens RPLP1 protein.
Length = 114
Score = 58.4 bits (135), Expect = 5e-09
Identities = 32/81 (39%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +3
Query: 3 AAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXXXXXXXXXXXXX 176
AA V+VEP+WPGLFAKAL +N+ LI N+G+G
Sbjct: 34 AAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKK 93
Query: 177 XXXXXXXXXXSDDDMGFGLFD 239
SDDDMGFGLFD
Sbjct: 94 VEAKKEESEESDDDMGFGLFD 114
>BC007590-1|AAH07590.1| 114|Homo sapiens ribosomal protein, large,
P1 protein.
Length = 114
Score = 58.4 bits (135), Expect = 5e-09
Identities = 32/81 (39%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +3
Query: 3 AAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXXXXXXXXXXXXX 176
AA V+VEP+WPGLFAKAL +N+ LI N+G+G
Sbjct: 34 AAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKK 93
Query: 177 XXXXXXXXXXSDDDMGFGLFD 239
SDDDMGFGLFD
Sbjct: 94 VEAKKEESEESDDDMGFGLFD 114
>BC003369-1|AAH03369.1| 114|Homo sapiens ribosomal protein, large,
P1 protein.
Length = 114
Score = 58.4 bits (135), Expect = 5e-09
Identities = 32/81 (39%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +3
Query: 3 AAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXXXXXXXXXXXXX 176
AA V+VEP+WPGLFAKAL +N+ LI N+G+G
Sbjct: 34 AAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKK 93
Query: 177 XXXXXXXXXXSDDDMGFGLFD 239
SDDDMGFGLFD
Sbjct: 94 VEAKKEESEESDDDMGFGLFD 114
>AB061836-1|BAB79474.1| 114|Homo sapiens ribosomal protein P1
protein.
Length = 114
Score = 58.4 bits (135), Expect = 5e-09
Identities = 32/81 (39%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +3
Query: 3 AAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXXXXXXXXXXXXX 176
AA V+VEP+WPGLFAKAL +N+ LI N+G+G
Sbjct: 34 AAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKK 93
Query: 177 XXXXXXXXXXSDDDMGFGLFD 239
SDDDMGFGLFD
Sbjct: 94 VEAKKEESEESDDDMGFGLFD 114
>CR542209-1|CAG47005.1| 114|Homo sapiens RPLP1 protein.
Length = 114
Score = 56.4 bits (130), Expect = 2e-08
Identities = 31/81 (38%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +3
Query: 3 AAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXXXXXXXXXXXXX 176
AA V+VEP+WPGLFAKAL +N+ LI ++G+G
Sbjct: 34 AAGVNVEPFWPGLFAKALANVNIGSLICDVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKK 93
Query: 177 XXXXXXXXXXSDDDMGFGLFD 239
SDDDMGFGLFD
Sbjct: 94 VEAKKEESEESDDDMGFGLFD 114
>AY303789-1|AAP68820.1| 113|Homo sapiens acidic ribosomal
phosphoprotein P1 protein.
Length = 113
Score = 56.0 bits (129), Expect = 3e-08
Identities = 31/80 (38%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +3
Query: 3 AAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXXXXXXXXXXXXX 176
AA V+VEP+WPGLFAKAL +N+ LI N+G+G
Sbjct: 34 AAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKK 93
Query: 177 XXXXXXXXXXSDDDMGFGLF 236
SDDDMGFGLF
Sbjct: 94 VEAKKEESEESDDDMGFGLF 113
>M17887-1|AAA36472.1| 115|Homo sapiens protein ( Human acidic
ribosomal phosphoprotein P2 mRNA, complete cds. ).
Length = 115
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 207 SDDDMGFGLFD 239
SDDDMGFGLFD
Sbjct: 105 SDDDMGFGLFD 115
>CR542248-1|CAG47044.1| 115|Homo sapiens RPLP2 protein.
Length = 115
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 207 SDDDMGFGLFD 239
SDDDMGFGLFD
Sbjct: 105 SDDDMGFGLFD 115
>CR542212-1|CAG47008.1| 115|Homo sapiens RPLP2 protein.
Length = 115
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 207 SDDDMGFGLFD 239
SDDDMGFGLFD
Sbjct: 105 SDDDMGFGLFD 115
>BC062314-1|AAH62314.1| 115|Homo sapiens ribosomal protein, large,
P2 protein.
Length = 115
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 207 SDDDMGFGLFD 239
SDDDMGFGLFD
Sbjct: 105 SDDDMGFGLFD 115
>BC007573-1|AAH07573.1| 115|Homo sapiens ribosomal protein, large,
P2 protein.
Length = 115
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 207 SDDDMGFGLFD 239
SDDDMGFGLFD
Sbjct: 105 SDDDMGFGLFD 115
>BC005920-1|AAH05920.1| 115|Homo sapiens ribosomal protein, large,
P2 protein.
Length = 115
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 207 SDDDMGFGLFD 239
SDDDMGFGLFD
Sbjct: 105 SDDDMGFGLFD 115
>BC005354-1|AAH05354.1| 115|Homo sapiens ribosomal protein, large,
P2 protein.
Length = 115
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 207 SDDDMGFGLFD 239
SDDDMGFGLFD
Sbjct: 105 SDDDMGFGLFD 115
>AB061837-1|BAB79475.1| 115|Homo sapiens ribosomal protein P2
protein.
Length = 115
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 207 SDDDMGFGLFD 239
SDDDMGFGLFD
Sbjct: 105 SDDDMGFGLFD 115
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,702,094
Number of Sequences: 237096
Number of extensions: 367348
Number of successful extensions: 546
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1910415606
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -