Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14f10
         (546 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.38 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   0.88 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    24   1.2  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   1.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   1.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   1.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   6.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.2  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 10/52 (19%), Positives = 19/52 (36%)
 Frame = -2

Query: 233 HATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERDSSMCAEPASEQV 78
           H   L  V      +  CT+  + +     +  H++   DSS+   P    +
Sbjct: 245 HVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIKTHSDSSVVGSPRDSPI 296


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 485  DGFLSSTDDVGSFRGSW 435
            DG  SS  D GS  GSW
Sbjct: 1064 DGITSSGSDSGSSNGSW 1080


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 161 RHQRQWCSSKGYATQSIPWKDRSRVQRYCSRSR 259
           R Q+ + +   Y      WK+RSR +    RSR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 161 RHQRQWCSSKGYATQSIPWKDRSRVQRYCSRSR 259
           R Q+ + +   Y      WK+RSR +    RSR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 161 RHQRQWCSSKGYATQSIPWKDRSRVQRYCSRSR 259
           R Q+ + +   Y      WK+RSR +    RSR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 161 RHQRQWCSSKGYATQSIPWKDRSRVQRYCSRSR 259
           R Q+ + +   Y      WK+RSR +    RSR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 122 ERDSSMCAEPASEQVPGAAAVTL 54
           ERD+S+ +  +    PGA A T+
Sbjct: 636 ERDASLSSTHSHPHEPGAPATTI 658


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/51 (19%), Positives = 22/51 (43%)
 Frame = +2

Query: 83  VRSQVPHTWNYPALHVHESVQSWRHCRHQRQWCSSKGYATQSIPWKDRSRV 235
           +R  +P   N+P  ++HE   +  + +   +    K Y+   +     SR+
Sbjct: 446 IRRYLPVLKNFPTRYIHEPWNAPLNVQRAAKCIIGKDYSLPMVNHSKSSRI 496


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -2

Query: 167 DVYNVSNFVHFHVRGERDSSMCAEPASEQVPGAAAVT 57
           ++YN S+ +  ++RGE  S+       + VP    +T
Sbjct: 376 NIYNASSRMENNLRGETQSNYREMEKRQSVPANDLLT 412


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 170 RQWCSSKGYATQSIPWKDRSRV 235
           R  C   GY  +SI W+  +RV
Sbjct: 509 RVTCPVAGYPIESIVWERDTRV 530


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,357
Number of Sequences: 438
Number of extensions: 2997
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)