Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14f09
(562 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR456604-1|CAG30490.1| 605|Homo sapiens Em:U62317.2 protein. 30 6.4
BC014939-1|AAH14939.2| 532|Homo sapiens NCAPH2 protein protein. 30 6.4
BC009441-1|AAH09441.1| 556|Homo sapiens non-SMC condensin II co... 30 6.4
BC001937-1|AAH01937.1| 555|Homo sapiens non-SMC condensin II co... 30 6.4
BC001833-1|AAH01833.1| 249|Homo sapiens non-SMC condensin II co... 30 6.4
BC001509-1|AAH01509.1| 249|Homo sapiens non-SMC condensin II co... 30 6.4
BC001298-1|AAH01298.1| 539|Homo sapiens NCAPH2 protein protein. 30 6.4
BC000473-1|AAH00473.1| 249|Homo sapiens non-SMC condensin II co... 30 6.4
>CR456604-1|CAG30490.1| 605|Homo sapiens Em:U62317.2 protein.
Length = 605
Score = 29.9 bits (64), Expect = 6.4
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Frame = +1
Query: 217 NVDKKYKTTYSESGSIPYTP----APDNVVKQGDPLYLQPHTVLITKEGVIQLIMKSKLP 384
NVD K T SE IP P APD + K +PLY + VL +++ M + +P
Sbjct: 130 NVDLKNDQTPSEVLIIPLLPMALVAPDEMEKNNNPLYSRQGEVLASRK---DFRMNTCVP 186
Query: 385 YAVELQAWLLEEVIPQVLCTGKYAPAVKMDTNYGVIEELNKKVGVC 522
+ A++LE + +P + G EE +V VC
Sbjct: 187 H--PRGAFMLEPEGMSPMEPAGVSPMPGTQKDTGRTEEQPMEVSVC 230
>BC014939-1|AAH14939.2| 532|Homo sapiens NCAPH2 protein protein.
Length = 532
Score = 29.9 bits (64), Expect = 6.4
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Frame = +1
Query: 217 NVDKKYKTTYSESGSIPYTP----APDNVVKQGDPLYLQPHTVLITKEGVIQLIMKSKLP 384
NVD K T SE IP P APD + K +PLY + VL +++ M + +P
Sbjct: 57 NVDLKNDQTPSEVLIIPLLPMALVAPDEMEKNNNPLYSRQGEVLASRK---DFRMNTCVP 113
Query: 385 YAVELQAWLLEEVIPQVLCTGKYAPAVKMDTNYGVIEELNKKVGVC 522
+ A++LE + +P + G EE +V VC
Sbjct: 114 H--PRGAFMLEPEGMSPMEPAGVSPMPGTQKDTGRTEEQPMEVSVC 157
>BC009441-1|AAH09441.1| 556|Homo sapiens non-SMC condensin II
complex, subunit H2 protein.
Length = 556
Score = 29.9 bits (64), Expect = 6.4
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Frame = +1
Query: 217 NVDKKYKTTYSESGSIPYTP----APDNVVKQGDPLYLQPHTVLITKEGVIQLIMKSKLP 384
NVD K T SE IP P APD + K +PLY + VL +++ M + +P
Sbjct: 80 NVDLKNDQTPSEVLIIPLLPMALVAPDEMEKNNNPLYSRQGEVLASRK---DFRMNTCVP 136
Query: 385 YAVELQAWLLEEVIPQVLCTGKYAPAVKMDTNYGVIEELNKKVGVC 522
+ A++LE + +P + G EE +V VC
Sbjct: 137 H--PRGAFMLEPEGMSPMEPAGVSPMPGTQKDTGRTEEQPMEVSVC 180
>BC001937-1|AAH01937.1| 555|Homo sapiens non-SMC condensin II
complex, subunit H2 protein.
Length = 555
Score = 29.9 bits (64), Expect = 6.4
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Frame = +1
Query: 217 NVDKKYKTTYSESGSIPYTP----APDNVVKQGDPLYLQPHTVLITKEGVIQLIMKSKLP 384
NVD K T SE IP P APD + K +PLY + VL +++ M + +P
Sbjct: 80 NVDLKNDQTPSEVLIIPLLPMALVAPDEMEKNNNPLYSRQGEVLASRK---DFRMNTCVP 136
Query: 385 YAVELQAWLLEEVIPQVLCTGKYAPAVKMDTNYGVIEELNKKVGVC 522
+ A++LE + +P + G EE +V VC
Sbjct: 137 H--PRGAFMLEPEGMSPMEPAGVSPMPGTQKDTGRTEEQPMEVSVC 180
>BC001833-1|AAH01833.1| 249|Homo sapiens non-SMC condensin II
complex, subunit H2 protein.
Length = 249
Score = 29.9 bits (64), Expect = 6.4
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Frame = +1
Query: 217 NVDKKYKTTYSESGSIPYTP----APDNVVKQGDPLYLQPHTVLITKEGVIQLIMKSKLP 384
NVD K T SE IP P APD + K +PLY + VL +++ M + +P
Sbjct: 80 NVDLKNDQTPSEVLIIPLLPMALVAPDEMEKNNNPLYSRQGEVLASRK---DFRMNTCVP 136
Query: 385 YAVELQAWLLEEVIPQVLCTGKYAPAVKMDTNYGVIEELNKKVGVC 522
+ A++LE + +P + G EE +V VC
Sbjct: 137 H--PRGAFMLEPEGMSPMEPAGVSPMPGTQKDTGRTEEQPMEVSVC 180
>BC001509-1|AAH01509.1| 249|Homo sapiens non-SMC condensin II
complex, subunit H2 protein.
Length = 249
Score = 29.9 bits (64), Expect = 6.4
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Frame = +1
Query: 217 NVDKKYKTTYSESGSIPYTP----APDNVVKQGDPLYLQPHTVLITKEGVIQLIMKSKLP 384
NVD K T SE IP P APD + K +PLY + VL +++ M + +P
Sbjct: 80 NVDLKNDQTPSEVLIIPLLPMALVAPDEMEKNNNPLYSRQGEVLASRK---DFRMNTCVP 136
Query: 385 YAVELQAWLLEEVIPQVLCTGKYAPAVKMDTNYGVIEELNKKVGVC 522
+ A++LE + +P + G EE +V VC
Sbjct: 137 H--PRGAFMLEPEGMSPMEPAGVSPMPGTQKDTGRTEEQPMEVSVC 180
>BC001298-1|AAH01298.1| 539|Homo sapiens NCAPH2 protein protein.
Length = 539
Score = 29.9 bits (64), Expect = 6.4
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Frame = +1
Query: 217 NVDKKYKTTYSESGSIPYTP----APDNVVKQGDPLYLQPHTVLITKEGVIQLIMKSKLP 384
NVD K T SE IP P APD + K +PLY + VL +++ M + +P
Sbjct: 80 NVDLKNDQTPSEVLIIPLLPMALVAPDEMEKNNNPLYSRQGEVLASRK---DFRMNTCVP 136
Query: 385 YAVELQAWLLEEVIPQVLCTGKYAPAVKMDTNYGVIEELNKKVGVC 522
+ A++LE + +P + G EE +V VC
Sbjct: 137 H--PRGAFMLEPEGMSPMEPAGVSPMPGTQKDTGRTEEQPMEVSVC 180
>BC000473-1|AAH00473.1| 249|Homo sapiens non-SMC condensin II
complex, subunit H2 protein.
Length = 249
Score = 29.9 bits (64), Expect = 6.4
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Frame = +1
Query: 217 NVDKKYKTTYSESGSIPYTP----APDNVVKQGDPLYLQPHTVLITKEGVIQLIMKSKLP 384
NVD K T SE IP P APD + K +PLY + VL +++ M + +P
Sbjct: 80 NVDLKNDQTPSEVLIIPLLPMALVAPDEMEKNNNPLYSRQGEVLASRK---DFRMNTCVP 136
Query: 385 YAVELQAWLLEEVIPQVLCTGKYAPAVKMDTNYGVIEELNKKVGVC 522
+ A++LE + +P + G EE +V VC
Sbjct: 137 H--PRGAFMLEPEGMSPMEPAGVSPMPGTQKDTGRTEEQPMEVSVC 180
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,753,481
Number of Sequences: 237096
Number of extensions: 1532311
Number of successful extensions: 3072
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3072
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5646880600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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