Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14e20
         (403 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   2.3  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   3.0  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   5.3  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   5.3  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   6.9  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
          releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 90 GECYTFCHVYFIIIFQRSCTGVLR 19
          G  Y F  ++FII F  + +G ++
Sbjct: 5  GSLYCFARLFFIIGFFNAISGAIK 28


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 237 YALPAQHSACRSLEQRYGS 293
           Y L   H A + L QRYG+
Sbjct: 74  YKLNKIHDAYKDLNQRYGA 92


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +1

Query: 211 NTQDSINFNTLYLRNILPVEVLNSVTGAPRYC 306
           N  ++ N+N     NI+ +E +      P YC
Sbjct: 101 NNYNNNNYNKKLYYNIINIEQIPVPVPVPVYC 132


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +1

Query: 211 NTQDSINFNTLYLRNILPVEVLNSVTGAPRYC 306
           N  ++ N+N     NI+ +E +      P YC
Sbjct: 101 NNYNNNNYNKKLYYNIINIEQIPVPVPVPVYC 132


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 207 MQHPGFD*LQYALPAQHSACRSLEQRYGSS 296
           M HPGF   +Y    +  A  +   RYG +
Sbjct: 197 MNHPGFADKEYRARRKFIAEIAFAYRYGDA 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.131    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,888
Number of Sequences: 438
Number of extensions: 2358
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)