Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14e19
         (408 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.33 
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    25   0.44 
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    25   0.44 
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    25   0.44 
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    25   0.44 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   3.1  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   5.4  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    20   9.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   9.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   9.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.33
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -3

Query: 316 QFQDLCKNLLHCRILRSCRCARICT*NCAC 227
           +++  C  L HC    +C C   C   C C
Sbjct: 738 RYEAHCFALCHCCDFDACDCEMTCPAGCKC 767


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.44
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +1

Query: 226 NTHSFKYRYVHNDTNAKFYNVIDFCKGLEI 315
           + +++KY Y +N+ N K Y  I++ + + I
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.44
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +1

Query: 226 NTHSFKYRYVHNDTNAKFYNVIDFCKGLEI 315
           + +++KY Y +N+ N K Y  I++ + + I
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.44
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +1

Query: 226 NTHSFKYRYVHNDTNAKFYNVIDFCKGLEI 315
           + +++KY Y +N+ N K Y  I++ + + I
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.44
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +1

Query: 226 NTHSFKYRYVHNDTNAKFYNVIDFCKGLEI 315
           + +++KY Y +N+ N K Y  I++ + + I
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +1

Query: 145 FDPDDYKKYHINVQQWSHIVKWDSFKCNTHSFKYRYVHNDTN 270
           FD  D   Y+ N  Q  H  K D+   N H+ +  +     N
Sbjct: 417 FDNQDNNHYNHNHNQARHSSKSDNQNNNQHNDQAHHSSKSNN 458


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 211 DSFKCNTHSFKYRYVHNDTNAKFY 282
           +++  N +++KY Y  N+ N K Y
Sbjct: 320 NNYNYNNNNYKYNY--NNYNKKLY 341


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = -3

Query: 349 CPNCNQVCRRAQFQDL 302
           C     +CR+  F+DL
Sbjct: 74  CEKVGCICRKTSFKDL 89


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 345 PIAIKYVVVRNFKTFAKIYYIVEFCVRVVV 256
           P ++   ++  +  FA I   +  CV VVV
Sbjct: 299 PTSLVVPLLGKYLIFAMILVSISICVTVVV 328


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 345 PIAIKYVVVRNFKTFAKIYYIVEFCVRVVV 256
           P ++   ++  +  FA I   +  CV VVV
Sbjct: 299 PTSLVVPLLGKYLIFAMILVSISICVTVVV 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,735
Number of Sequences: 438
Number of extensions: 1621
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)