Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14e12
         (131 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   1.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    19   7.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    19   7.2  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 19  RYSISAGNLSEALASRPESRELRHG*E*QTHRL 117
           +YS + GN+  A+   P+  + +H      H+L
Sbjct: 158 KYSTNKGNIRSAITIFPQRTDGKHDYRVWNHQL 190


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 75  SRITSWLGMTDSPP 116
           S ++ WL M  SPP
Sbjct: 249 SWVSFWLHMDASPP 262


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 81  ITSWLGMTDS 110
           +TSWLG  +S
Sbjct: 661 VTSWLGYMNS 670


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,711
Number of Sequences: 438
Number of extensions: 287
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 24
effective length of database: 135,831
effective search space used:  2580789
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)