Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14e10
         (424 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.066
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 27.5 bits (58), Expect = 0.066
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 262 FCEFCRRVVRKLRWRQPSNARATNSGGKIYMGTERPSLRTCKGTS 128
           FC+  +R + K++WR+P  A         Y+  E  +LRT  G S
Sbjct: 24  FCQPTQRTMSKIQWRKPKPAMVEEKTQLRYL-EELNALRTELGAS 67


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +1

Query: 79   SSFTYALTMSDAPGRPMKFPYTFSAKVAQF 168
            ++ TY  T  D PG P       S+  A F
Sbjct: 1202 TTVTYCQTEEDVPGSPADIKVVVSSPQALF 1231


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +1

Query: 79   SSFTYALTMSDAPGRPMKFPYTFSAKVAQF 168
            ++ TY  T  D PG P       S+  A F
Sbjct: 1198 TTVTYCQTEEDVPGSPADIKVVVSSPQALF 1227


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 8   FDFDQTSLRKLKRLSQIIKCFQSFLHLLTPSRCR 109
           F+  Q  +R  K ++Q I C Q  +   T S CR
Sbjct: 610 FNCTQYQIRDHKDVTQCISCRQGTVPDETHSACR 643


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 29  LRKLKRLSQIIKCFQSFL 82
           LRK K L   I CF S+L
Sbjct: 411 LRKRKELFIAIVCFVSYL 428


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 29  LRKLKRLSQIIKCFQSFL 82
           LRK K L   I CF S+L
Sbjct: 464 LRKRKELFIAIVCFVSYL 481


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,709
Number of Sequences: 438
Number of extensions: 2475
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)