Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14e05
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.33 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.44 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.58 
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   7.1  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   9.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 33  NLLT-LERDHFKYLFLTSYFDLKDNEHVPSEPMAFIRNYLNCTFDLLDD 176
           N+LT ++   FK LF     DL++N     E  AF+  Y   T +L D+
Sbjct: 345 NMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDN 393


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 425 LAKFSVQESHHFTRIGRKQVRGVHVRA 345
           L +F   E+HH  R GR+Q R + + A
Sbjct: 72  LLRFENPETHHPIRHGRRQSRSMDLNA 98


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 316 SKMSTVVRLHTNRNCGFTN 260
           S  ST+VR H N  C  TN
Sbjct: 335 STKSTIVRNHLNSTCSVTN 353


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -1

Query: 274 CGFTNLKMFVDVLPTKCFNCM 212
           CG TNL M    LP     C+
Sbjct: 22  CGKTNLAMMKPTLPGYKIECV 42


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 450 NINNYGCVLA 479
           N  NYGC LA
Sbjct: 64  NFRNYGCFLA 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,504
Number of Sequences: 438
Number of extensions: 2740
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)