Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14d22
         (481 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.2  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               21   9.1  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   9.1  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 122 YGYII*IDSTLKCDHGYFHNCVSHNIVASV 211
           Y  I+ I+  L  DH   ++CV+ N+ A V
Sbjct: 666 YNSILMIEH-LSPDHNGNYSCVARNLAAEV 694


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 234 LISQYPILKNETYQFYHLAVDKISGQVYAGSLNWLHQLSPDLKPIHVVK 380
           ++   P  KN    +Y  ++D    QV+   LNW +Q   D+K + V++
Sbjct: 582 IVDVIPTDKNPVQLWYVPSLD----QVWI--LNWRNQKDIDVKTVQVIE 624


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 66 TCKCIHRCRRHG 31
          T  C  RC++HG
Sbjct: 35 TALCARRCQQHG 46


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +3

Query: 210 CTRVQCNDLISQYPILKNETYQFYHLAVDKISGQV 314
           CT  +C    ++  +++       HLA DK+  +V
Sbjct: 4   CTCEKCKITANRQQVMRQNMKLKRHLAQDKVKVRV 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,513
Number of Sequences: 438
Number of extensions: 2663
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)