Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14d20
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   2.3  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              23   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   2.3  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   2.3  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   2.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.2  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 303 ILCNLVQ---NGEYDLNAIMFNCAEIKLNKGQMLFQTKIYRPDNNKT 434
           +L N +Q   N +++ + + F      +N  +++  T+   PDN++T
Sbjct: 380 VLSNKMQKMVNNDFNFDDVNFRIMNANVN--ELILNTRCENPDNDRT 424


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 120 DIIVNAQINSEDENVLDFI 176
           D I   +IN +DENVL FI
Sbjct: 45  DDINEGKINMDDENVLLFI 63


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 237  SSPQLRLLYKNAYSAVSCGNYSI 305
            SSP   L+ ++A  A SCG  S+
Sbjct: 1257 SSPATALMLQHAPPAYSCGTVSV 1279


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +3

Query: 96  ANTSNITPDIIVNAQINSEDE 158
           +NTSNI+  +I++ ++ S D+
Sbjct: 91  SNTSNISKTVILSDKLESSDD 111


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 303 ILCNLVQ---NGEYDLNAIMFNCAEIKLNKGQMLFQTKIYRPDNNKT 434
           +L N +Q   N +++ + + F      +N  +++  T+   PDN++T
Sbjct: 380 VLSNKMQKMVNNDFNFDDVNFRIMNANVN--ELILNTRCENPDNDRT 424


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 303 ILCNLVQ---NGEYDLNAIMFNCAEIKLNKGQMLFQTKIYRPDNNKT 434
           +L N +Q   N +++ + + F      +N  +++  T+   PDN++T
Sbjct: 380 VLSNKMQKMVNNDFNFDDVNFRIMNANVN--ELILNTRCENPDNDRT 424


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 59  QIN*SKRYYKKNGKHEQHYAR 121
           +IN  +  Y + GKH  H+ R
Sbjct: 8   EINPKEGLYDEGGKHTVHWFR 28


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 74  KRYYKKNGKHEQHYARHHCERPNQ 145
           +R ++ +GK  +H   H  ERP++
Sbjct: 154 ERAFEHSGKLHRHMRIHTGERPHK 177


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 101 HEQHYARHHCER 136
           H+Q  AR++CER
Sbjct: 238 HQQIMARYNCER 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,558
Number of Sequences: 438
Number of extensions: 2533
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)