Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14d19
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   6.7  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   6.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -1

Query: 393 IITQKCRIGFYSFHVQIQHISLGV*LL*CITGFWLVFEIYPRR 265
           +   K R+G+Y FH  I    +   ++     FW+  E  P R
Sbjct: 237 VFVLKRRLGYYLFHTYIPTCLI---VIMSWVSFWIKPEAAPAR 276


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/46 (21%), Positives = 21/46 (45%)
 Frame = -2

Query: 428 LSFNFWRICITS*LHRNAELAFIVSMFKFNTYHLVFDFSNVSLAFG 291
           +SFN W + +   +   A+  + +  FK N + + + +      FG
Sbjct: 1   MSFNIWWLILYFSIVCQAKAHYSLRDFKANIFQVKYQWKYFDYNFG 46


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = -2

Query: 308 VSLAFGLFLKYIHEGPNIENIPHLTLLYTCFLWL 207
           +S  + +  + I E  N       T+  TC +WL
Sbjct: 687 ISTVYAVKTRKIPENFNESKFIGFTMYTTCIIWL 720


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 523 HSDFCILCLVS 491
           HSD C LCL S
Sbjct: 351 HSDSCCLCLDS 361


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = -2

Query: 308 VSLAFGLFLKYIHEGPNIENIPHLTLLYTCFLWL 207
           +S  + +  + I E  N       T+  TC +WL
Sbjct: 777 ISTVYAVKTRKIPENFNESKFIGFTMYTTCIIWL 810


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,593
Number of Sequences: 438
Number of extensions: 2534
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)