Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14d11
         (447 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   2.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   2.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.6  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    21   6.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   6.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   6.1  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +1

Query: 112 SAEVADNSVDPPAKKRKLNTGEAHSNNSAMANNGARVEDEIDESLYSRQ 258
           ++ + DN    P +    N+G A  NN   +++GA   D    S  S +
Sbjct: 233 NSPLEDNIKCEPLELTGGNSGNAAGNNEDSSDSGAAASDRPPASASSNE 281



 Score = 21.8 bits (44), Expect = 3.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 279 VVAQHVELARVQTLVDFIFH 220
           +V Q V  + +  LV+FI+H
Sbjct: 71  IVLQDVAFSDLHALVEFIYH 90


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 309 DIRTRHSTHSVVAQHVELARVQTLVD 232
           D RTRH +  VVA   E   +  ++D
Sbjct: 338 DRRTRHLSDRVVALEAEKKNLSKVID 363


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 181 ALLLYLVSAFSPGGQ 137
           AL+LYL+  FSP G+
Sbjct: 580 ALVLYLLDRFSPFGR 594


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = +1

Query: 67   QPKFWQNCARSCPMSSAEVADNSVDPPAKKRKLNT 171
            + +FW+    + P +     ++   P   KR +NT
Sbjct: 1193 EKRFWERLRYAIPSAGDISIESKSSPLVYKRNINT 1227


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 344 ISTPKPPRPDIR 309
           IS P+PP P +R
Sbjct: 105 ISQPRPPHPRLR 116



 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 344 ISTPKPPRPDIR 309
           IS P+PP P +R
Sbjct: 161 ISQPRPPHPRLR 172


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 225 FHARSIVRHCRVVRMRFSCI 166
           ++ RSI  H R+V++R S I
Sbjct: 642 YYNRSIPDHKRIVKLRGSII 661


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 225 FHARSIVRHCRVVRMRFSCI 166
           ++ RSI  H R+V++R S I
Sbjct: 680 YYNRSIPDHKRIVKLRGSII 699


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,356
Number of Sequences: 438
Number of extensions: 2975
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)