Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14d09
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 515 LIKCIAPTYVGDF 553
           ++KC+ P++V DF
Sbjct: 121 ILKCVVPSFVADF 133


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 18/71 (25%), Positives = 27/71 (38%)
 Frame = +2

Query: 218 TDYNKILDSYANSGFQATNFGKTIVEINNMLKSRAVPLTEENSDCYEEDQFIKKKTNCTI 397
           T+ N I     NS +  T          ++      P+  E  D YE  Q  KKK +   
Sbjct: 219 TNSNSIKHESDNSDYSHTTDENRHSSTLDIDHKMLTPIKSEPIDAYEMHQISKKKLSPAT 278

Query: 398 FLGYTSNMISS 430
             G   +MI++
Sbjct: 279 PKGSKCSMITT 289


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 233 ILDSYANSGFQATNFGKTIVEI 298
           ILD Y N G    ++ +T +EI
Sbjct: 178 ILDQYTNPGNPLAHYDQTAIEI 199


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 209 ENGTDYNKILDSYANSGF 262
           E G    ++LDSYA SGF
Sbjct: 436 EGGMYVFQLLDSYAVSGF 453


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 209 ENGTDYNKILDSYANSGF 262
           E G    ++LDSYA SGF
Sbjct: 489 EGGMYVFQLLDSYAVSGF 506


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage
          protein protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 61 DLENNKNSYGNPV 99
          D+E+N + Y NP+
Sbjct: 60 DIESNSHQYKNPI 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,325
Number of Sequences: 438
Number of extensions: 4273
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)