Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14d05
         (501 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    27   0.11 
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    27   0.11 
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   3.1  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   3.1  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   3.1  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   3.1  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   3.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   4.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   4.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   4.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.5  

>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 27.1 bits (57), Expect = 0.11
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 217 STVATPFPSFMASQNNDRSPMTNNRTDKTF 128
           +TV  P PSF  S+N D    T++  D T+
Sbjct: 28  NTVLQPRPSFELSKNGDEWTFTSSSGDNTY 57


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 27.1 bits (57), Expect = 0.11
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 217 STVATPFPSFMASQNNDRSPMTNNRTDKTF 128
           +TV  P PSF  S+N D    T++  D T+
Sbjct: 30  NTVLQPRPSFELSKNGDEWTFTSSSGDNTY 59


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 22/96 (22%), Positives = 39/96 (40%)
 Frame = +2

Query: 182 CHKRWERSCHRGRTGHKATHSFGLQ*EKMSRQD*QRLVRYNRIIREH*EESIMQDWLDIR 361
           CH R+E S H  R  ++         ++ SR+  ++  RY+++   + EE  +++    R
Sbjct: 230 CHSRYEDSRHEDRNSYRNDGERSCSRDR-SREYKKKDRRYDQL--HNVEEKHLRERTSRR 286

Query: 362 GEDRQLCTEMHERVRERNLRGARGVHLSRASGPQTR 469
              R    E      ER  R  R     R+   + R
Sbjct: 287 RYSRSREREQKSYKNEREYREYRETSRERSRDRRER 322


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 22/96 (22%), Positives = 39/96 (40%)
 Frame = +2

Query: 182 CHKRWERSCHRGRTGHKATHSFGLQ*EKMSRQD*QRLVRYNRIIREH*EESIMQDWLDIR 361
           CH R+E S H  R  ++         ++ SR+  ++  RY+++   + EE  +++    R
Sbjct: 230 CHSRYEDSRHEDRNSYRNDGERSCSRDR-SREYKKKDRRYDQL--HNVEEKHLRERTSRR 286

Query: 362 GEDRQLCTEMHERVRERNLRGARGVHLSRASGPQTR 469
              R    E      ER  R  R     R+   + R
Sbjct: 287 RYSRSREREQKSYKNEREYREYRETSRERSRDRRER 322


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 22/96 (22%), Positives = 39/96 (40%)
 Frame = +2

Query: 182 CHKRWERSCHRGRTGHKATHSFGLQ*EKMSRQD*QRLVRYNRIIREH*EESIMQDWLDIR 361
           CH R+E S H  R  ++         ++ SR+  ++  RY+++   + EE  +++    R
Sbjct: 230 CHSRYEDSRHEDRNSYRNDGERSCSRDR-SREYKKKDRRYDQL--HNVEEKHLRERTSRR 286

Query: 362 GEDRQLCTEMHERVRERNLRGARGVHLSRASGPQTR 469
              R    E      ER  R  R     R+   + R
Sbjct: 287 RYSRSREREQKSYKNEREYREYRETSRERSRDRRER 322


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 22/96 (22%), Positives = 39/96 (40%)
 Frame = +2

Query: 182 CHKRWERSCHRGRTGHKATHSFGLQ*EKMSRQD*QRLVRYNRIIREH*EESIMQDWLDIR 361
           CH R+E S H  R  ++         ++ SR+  ++  RY+++   + EE  +++    R
Sbjct: 230 CHSRYEDSRHEDRNSYRNDGERSCSRDR-SREYKKKDRRYDQL--HNVEEKHLRERTSRR 286

Query: 362 GEDRQLCTEMHERVRERNLRGARGVHLSRASGPQTR 469
              R    E      ER  R  R     R+   + R
Sbjct: 287 RYSRSREREQKSYKNEREYREYRETSRERSRDRRER 322


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 22/96 (22%), Positives = 39/96 (40%)
 Frame = +2

Query: 182 CHKRWERSCHRGRTGHKATHSFGLQ*EKMSRQD*QRLVRYNRIIREH*EESIMQDWLDIR 361
           CH R+E S H  R  ++         ++ SR+  ++  RY+++   + EE  +++    R
Sbjct: 230 CHSRYEDSRHEDRNSYRNDGERSCSRDR-SREYKKKDRRYDQL--HNVEEKHLRERTSRR 286

Query: 362 GEDRQLCTEMHERVRERNLRGARGVHLSRASGPQTR 469
              R    E      ER  R  R     R+   + R
Sbjct: 287 RYSRSREREQKSYKNEREYREYRETSRERSRDRRER 322


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 182 CHKRWERSCHRGRTGHK 232
           CH R+E S H  R  ++
Sbjct: 230 CHSRYEDSRHEDRNSYR 246


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 417 CEAPEVCTCPE 449
           CE PEVC  P+
Sbjct: 222 CEKPEVCDYPD 232


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 417 CEAPEVCTCPE 449
           CE PEVC  P+
Sbjct: 222 CEKPEVCDYPD 232


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 417 CEAPEVCTCPE 449
           CE PEVC  P+
Sbjct: 222 CEKPEVCDYPD 232


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 3    IVCLLASKAHGS 38
            ++C+L  K HGS
Sbjct: 1604 VICVLRGKGHGS 1615


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 64  FNCDKLCKRSRR 99
           +NC++LC R  R
Sbjct: 245 YNCERLCNRLGR 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,998
Number of Sequences: 438
Number of extensions: 3385
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)