Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14c24
         (486 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                28   0.046
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.0  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    21   9.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   9.2  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   9.2  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 28.3 bits (60), Expect = 0.046
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 472 RSPPRLADEQSEYLRAISSNCASFATIC 389
           R PP L++  S Y+ ++ ++ A FAT C
Sbjct: 367 RQPPTLSESYSSYVNSMYASGAQFATPC 394


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 132 SNENEPPLPDGWEMRTSRSTGMTYYLNTY 218
           +N+N   L D W+  T     +  YLNTY
Sbjct: 185 NNKNFVDLSDYWKSGTWDIINVPAYLNTY 213


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 326 PGSWATAFSVFNQYMTAA 273
           P SW  A +V N+Y+ A+
Sbjct: 548 PCSWGRAINVANRYVYAS 565


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 149 TTARWMGNENQPINRNDLLSQHLYQEVSMGAS*STGRCW-*GPLQSY 286
           T  R + ++ QP + +  + QH     S   S  T RC+  GP +S+
Sbjct: 262 TVNRQLNSDVQPGHGSPPVKQHRSSSASTTCSGHTVRCFTGGPRKSH 308


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = +3

Query: 333 EKITRTKEEALELIKGYRKQIVANDAQFDEIALKYSDCSSAKRGGDLGMF 482
           E I  T+      ++GY       +AQ+ E+  K S   S   G   G F
Sbjct: 101 EFIVSTRVRCGRSLEGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGTF 150


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 408 AQFDEIALKYSDCSSAKRG 464
           +  DEI  +Y D SS+  G
Sbjct: 327 SSLDEIRTRYKDSSSSVEG 345


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = +3

Query: 333 EKITRTKEEALELIKGYRKQIVANDAQFDEIALKYSDCSSAKRGGDLGMF 482
           E I  T+      ++GY       +AQ+ E+  K S   S   G   G F
Sbjct: 117 EFIVSTRVRCGRSLEGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGTF 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,830
Number of Sequences: 438
Number of extensions: 2646
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)