Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14c05
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   1.1  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   3.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   3.3  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/66 (19%), Positives = 27/66 (40%)
 Frame = +1

Query: 37  NNQTTMTQINFNASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSD 216
           ++Q   +  N         +P+ AS ++  S         +Y   +N+P+P G+    S 
Sbjct: 14  HHQQLFSSANPGTIQACTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSG 73

Query: 217 SETAAA 234
           S  + +
Sbjct: 74  SSASTS 79


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 326 LVLLIIRNPLSCLLRSNHR 382
           LV+L +   +SC++ S HR
Sbjct: 212 LVMLYVYGRISCVIASRHR 230


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 220 ETAAASNFLASVNSLTDDNDIMECLLKTTDNLGEAVSS 333
           E A   + L + N + DD + + CL+   +   + +SS
Sbjct: 291 EKALQGDDLRTANIIADDPEGVSCLVIDRETFNQLISS 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.307    0.122    0.338 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,388
Number of Sequences: 438
Number of extensions: 3488
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)