Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14b24
         (557 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   3.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   3.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   3.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   3.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.8  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   6.4  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   8.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   8.4  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = -1

Query: 506 ITP*FVSILTAGAYLPVHSTCGITSSSSHACNSTA*GSLLFIISWITPSLVMSTVCGC 333
           +T  F++       +P     G+T+  +    S    S L ++S +T   V   VC C
Sbjct: 315 VTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMC 372


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = -1

Query: 506 ITP*FVSILTAGAYLPVHSTCGITSSSSHACNSTA*GSLLFIISWITPSLVMSTVCGC 333
           +T  F++       +P     G+T+  +    S    S L ++S +T   V   VC C
Sbjct: 284 VTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMC 341


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = -1

Query: 506 ITP*FVSILTAGAYLPVHSTCGITSSSSHACNSTA*GSLLFIISWITPSLVMSTVCGC 333
           +T  F++       +P     G+T+  +    S    S L ++S +T   V   VC C
Sbjct: 335 VTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMC 392


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = -1

Query: 506 ITP*FVSILTAGAYLPVHSTCGITSSSSHACNSTA*GSLLFIISWITPSLVMSTVCGC 333
           +T  F++       +P     G+T+  +    S    S L ++S +T   V   VC C
Sbjct: 284 VTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMC 341


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 535 QTPTFYLTLQSHHNLCPS*R 476
           QT   Y   Q+H  LCP+ R
Sbjct: 367 QTSVHYSNGQTHSQLCPTPR 386


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +1

Query: 334 QPHTVLITKEGVIQL 378
           +PHT L+T++ +++L
Sbjct: 127 RPHTYLVTRQKLLEL 141


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +1

Query: 334 QPHTVLITKEGVIQL 378
           +PHT L+T++ +++L
Sbjct: 126 RPHTSLVTRQKLLEL 140


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +1

Query: 334 QPHTVLITKEGVIQL 378
           +PHT L+T++ +++L
Sbjct: 248 RPHTSLVTRQKLLEL 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,917
Number of Sequences: 438
Number of extensions: 2681
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)