Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14a19
         (425 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   5.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.6  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   7.6  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 81  HSEGDPNDAYTTQN 40
           H  GD NDA+ T N
Sbjct: 119 HMSGDRNDAHGTGN 132


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 199 NPGKFKVSCASVNPKYCLVSLKYL 128
           NP  F+VSCA+ + +   +S + L
Sbjct: 417 NPDIFRVSCATEHSQLTNISEEVL 440


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 199 NPGKFKVSCASVNPKYCLVSLKYL 128
           NP  F+VSCA+ + +   +S + L
Sbjct: 123 NPDIFRVSCATEHSQLTNISEEVL 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,894
Number of Sequences: 438
Number of extensions: 2080
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)