Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14a04
(632 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC105606-1|AAI05607.1| 97|Homo sapiens HELLS protein protein. 33 0.84
AF047368-1|AAF24858.1| 1011|Homo sapiens nebulette protein. 32 1.9
BC041089-1|AAH41089.1| 1390|Homo sapiens polymerase (RNA) III (D... 31 3.4
AY091459-1|AAM12029.1| 374|Homo sapiens RNA polymerase III subu... 31 3.4
AL512628-1|CAI16466.1| 1390|Homo sapiens polymerase (RNA) III (D... 31 3.4
AF021351-1|AAB86536.1| 1391|Homo sapiens RNA polymerase III larg... 31 3.4
BX538033-1|CAD97978.1| 822|Homo sapiens hypothetical protein pr... 30 5.9
AL138759-2|CAH70222.1| 192|Homo sapiens helicase, lymphoid-spec... 30 5.9
AL138759-1|CAD13191.1| 838|Homo sapiens helicase, lymphoid-spec... 30 5.9
AF155827-1|AAF82262.1| 838|Homo sapiens proliferation-associate... 30 5.9
AB113249-1|BAD24805.1| 782|Homo sapiens lymphoid specific helic... 30 5.9
AB113248-1|BAD24804.1| 809|Homo sapiens lymphoid specific helic... 30 5.9
AB102723-1|BAD10851.1| 884|Homo sapiens lymphoid specific helic... 30 5.9
AB102722-1|BAD10850.1| 315|Homo sapiens lymphoid specific helic... 30 5.9
AB102721-1|BAD10849.1| 740|Homo sapiens lymphoid specific helic... 30 5.9
AB102720-1|BAD10848.1| 345|Homo sapiens lymphoid specific helic... 30 5.9
AB102719-1|BAD10847.1| 708|Homo sapiens lymphoid specific helic... 30 5.9
AB102718-1|BAD10846.1| 806|Homo sapiens lymphoid specific helic... 30 5.9
AB102717-1|BAD10845.1| 129|Homo sapiens lymphoid specific helic... 30 5.9
>BC105606-1|AAI05607.1| 97|Homo sapiens HELLS protein protein.
Length = 97
Score = 33.1 bits (72), Expect = 0.84
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +2
Query: 140 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 319
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 320 ERKMSKRKK 346
++K K+KK
Sbjct: 89 QKKKKKKKK 97
>AF047368-1|AAF24858.1| 1011|Homo sapiens nebulette protein.
Length = 1011
Score = 31.9 bits (69), Expect = 1.9
Identities = 25/99 (25%), Positives = 47/99 (47%)
Frame = +2
Query: 47 TNCQAVGH*KNISSRIQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYN 226
T+ + H KNI + I ++KG K+++ N ++ +V E + +L+S
Sbjct: 69 TDSPMLTHVKNIGAFISEAKYKGTIKADLSNSLYKRMPATIDSVFAGE--VTQLQSEVAY 126
Query: 227 KSNMDQLIAIVNFLEKKNINYILNVMPVMQDERKMSKRK 343
K NM L I+++ K + + M V + + +S RK
Sbjct: 127 KQNM-MLPRILSYAHMKEPPEVKHAMEVNKHQSNISYRK 164
>BC041089-1|AAH41089.1| 1390|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide A, 155kDa protein.
Length = 1390
Score = 31.1 bits (67), Expect = 3.4
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +3
Query: 3 ITDKCSKRKVCLH---HKRIARLLGIKKIYHQEY---KRVVSKVYKN 125
I+DKC K+ +C H + G+ KI H++Y K+VV + N
Sbjct: 146 ISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSN 192
>AY091459-1|AAM12029.1| 374|Homo sapiens RNA polymerase III subunit
RPC155-A protein.
Length = 374
Score = 31.1 bits (67), Expect = 3.4
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +3
Query: 3 ITDKCSKRKVCLH---HKRIARLLGIKKIYHQEY---KRVVSKVYKN 125
I+DKC K+ +C H + G+ KI H++Y K+VV + N
Sbjct: 146 ISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSN 192
>AL512628-1|CAI16466.1| 1390|Homo sapiens polymerase (RNA) III (DNA
directed) (155kD) (RPC155) protein.
Length = 1390
Score = 31.1 bits (67), Expect = 3.4
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +3
Query: 3 ITDKCSKRKVCLH---HKRIARLLGIKKIYHQEY---KRVVSKVYKN 125
I+DKC K+ +C H + G+ KI H++Y K+VV + N
Sbjct: 146 ISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSN 192
>AF021351-1|AAB86536.1| 1391|Homo sapiens RNA polymerase III largest
subunit protein.
Length = 1391
Score = 31.1 bits (67), Expect = 3.4
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +3
Query: 3 ITDKCSKRKVCLH---HKRIARLLGIKKIYHQEY---KRVVSKVYKN 125
I+DKC K+ +C H + G+ KI H++Y K+VV + N
Sbjct: 146 ISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSN 192
>BX538033-1|CAD97978.1| 822|Homo sapiens hypothetical protein
protein.
Length = 822
Score = 30.3 bits (65), Expect = 5.9
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +2
Query: 140 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 319
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 14 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 72
Query: 320 ERKMSKRKKKVINNNK 367
++ ++KK+ + K
Sbjct: 73 QQLEEQKKKEKLERKK 88
>AL138759-2|CAH70222.1| 192|Homo sapiens helicase,
lymphoid-specific protein.
Length = 192
Score = 30.3 bits (65), Expect = 5.9
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +2
Query: 140 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 319
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 14 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 72
Query: 320 ERKMSKRKKKVINNNK 367
++ ++KK+ + K
Sbjct: 73 QQLEEQKKKEKLERKK 88
>AL138759-1|CAD13191.1| 838|Homo sapiens helicase,
lymphoid-specific protein.
Length = 838
Score = 30.3 bits (65), Expect = 5.9
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +2
Query: 140 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 319
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 320 ERKMSKRKKKVINNNK 367
++ ++KK+ + K
Sbjct: 89 QQLEEQKKKEKLERKK 104
>AF155827-1|AAF82262.1| 838|Homo sapiens proliferation-associated
SNF2-like protein protein.
Length = 838
Score = 30.3 bits (65), Expect = 5.9
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +2
Query: 140 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 319
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 320 ERKMSKRKKKVINNNK 367
++ ++KK+ + K
Sbjct: 89 QQLEEQKKKEKLERKK 104
>AB113249-1|BAD24805.1| 782|Homo sapiens lymphoid specific helicase
variant10 protein.
Length = 782
Score = 30.3 bits (65), Expect = 5.9
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +2
Query: 140 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 319
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 320 ERKMSKRKKKVINNNK 367
++ ++KK+ + K
Sbjct: 89 QQLEEQKKKEKLERKK 104
>AB113248-1|BAD24804.1| 809|Homo sapiens lymphoid specific helicase
variant9 protein.
Length = 809
Score = 30.3 bits (65), Expect = 5.9
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +2
Query: 140 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 319
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 320 ERKMSKRKKKVINNNK 367
++ ++KK+ + K
Sbjct: 89 QQLEEQKKKEKLERKK 104
>AB102723-1|BAD10851.1| 884|Homo sapiens lymphoid specific helicase
variant8 protein.
Length = 884
Score = 30.3 bits (65), Expect = 5.9
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +2
Query: 140 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 319
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 320 ERKMSKRKKKVINNNK 367
++ ++KK+ + K
Sbjct: 89 QQLEEQKKKEKLERKK 104
>AB102722-1|BAD10850.1| 315|Homo sapiens lymphoid specific helicase
variant7 protein.
Length = 315
Score = 30.3 bits (65), Expect = 5.9
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +2
Query: 140 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 319
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 320 ERKMSKRKKKVINNNK 367
++ ++KK+ + K
Sbjct: 89 QQLEEQKKKEKLERKK 104
>AB102721-1|BAD10849.1| 740|Homo sapiens lymphoid specific helicase
variant6 protein.
Length = 740
Score = 30.3 bits (65), Expect = 5.9
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +2
Query: 140 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 319
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 320 ERKMSKRKKKVINNNK 367
++ ++KK+ + K
Sbjct: 89 QQLEEQKKKEKLERKK 104
>AB102720-1|BAD10848.1| 345|Homo sapiens lymphoid specific helicase
variant5 protein.
Length = 345
Score = 30.3 bits (65), Expect = 5.9
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +2
Query: 140 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 319
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 320 ERKMSKRKKKVINNNK 367
++ ++KK+ + K
Sbjct: 89 QQLEEQKKKEKLERKK 104
>AB102719-1|BAD10847.1| 708|Homo sapiens lymphoid specific helicase
variant4 protein.
Length = 708
Score = 30.3 bits (65), Expect = 5.9
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +2
Query: 140 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 319
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 320 ERKMSKRKKKVINNNK 367
++ ++KK+ + K
Sbjct: 89 QQLEEQKKKEKLERKK 104
>AB102718-1|BAD10846.1| 806|Homo sapiens lymphoid specific helicase
variant3 protein.
Length = 806
Score = 30.3 bits (65), Expect = 5.9
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +2
Query: 140 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 319
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 320 ERKMSKRKKKVINNNK 367
++ ++KK+ + K
Sbjct: 89 QQLEEQKKKEKLERKK 104
>AB102717-1|BAD10845.1| 129|Homo sapiens lymphoid specific helicase
variant2 protein.
Length = 129
Score = 30.3 bits (65), Expect = 5.9
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +2
Query: 140 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 319
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 320 ERKMSKRKKKVINNNK 367
++ ++KK+ + K
Sbjct: 89 QQLEEQKKKEKLERKK 104
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,185,572
Number of Sequences: 237096
Number of extensions: 2022594
Number of successful extensions: 4110
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4110
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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