Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13p11
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    28   0.075
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    28   0.075
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    27   0.100
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   6.6  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   6.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.6  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 27.9 bits (59), Expect = 0.075
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = -1

Query: 536 YLXVCAAINSPLQNCGKPVPPAGSSTPGRYRGAPPWTFGKTGVCIMICGTISGA 375
           YL V   I+ P + CG P       TP     A  WT  +  +C    G +S A
Sbjct: 125 YLLVSLRIDLPWRTCGNPWNTRYCLTPTERLEALCWTQDEDVICSTPIGNLSHA 178


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 27.9 bits (59), Expect = 0.075
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 509 SPLQNCGKPVPPAGSSTPGRYRGAPPWTFGKTGVCIMICGTISGA 375
           SPL   G P+    S+   R++   P+T+G  GV ++    ++GA
Sbjct: 535 SPLSLLGGPLVMVCSAPVWRFQPWGPFTWGGIGVVVLFAVVLAGA 579



 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 433 GGAPLYLPGVELPAGG 480
           G   L+ PG ELPA G
Sbjct: 59  GANALFTPGQELPARG 74


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 27.5 bits (58), Expect = 0.100
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = -1

Query: 536 YLXVCAAINSPLQNCGKPVPPAGSSTPGRYRGAPPWTFGKTGVCIMICGTISGA 375
           YL V   I+ P + CG P       TP     A  WT  +  +C    G +S A
Sbjct: 178 YLLVSLRIDLPWRTCGNPWNTRYCLTPTERLEALCWTQDEDIICSTPIGNLSHA 231


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 380 GACQSAHTVGTNPSATSIIIGTPSITY 300
           G C++  T  ++P+A  I  GT    Y
Sbjct: 112 GGCRNFSTCSSHPTAAFISYGTLFFIY 138


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 380 GACQSAHTVGTNPSATSIIIGTPSITY 300
           G C++  T  ++P+A  I  GT    Y
Sbjct: 111 GGCRNFSTCSSHPTAAFISYGTLFFIY 137


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -1

Query: 491 GKPVPPAGSSTPGRYRGAPP 432
           G P  P+    PG   GAPP
Sbjct: 37  GSPPNPSQGPPPGGPPGAPP 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,818
Number of Sequences: 438
Number of extensions: 4257
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)