Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13p09
(723 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongatio... 36 0.19
AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription ... 36 0.19
AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongatio... 36 0.19
U91543-1|AAC39923.1| 2000|Homo sapiens zinc-finger helicase prot... 34 0.59
BC110648-1|AAI10649.1| 661|Homo sapiens CHD3 protein protein. 34 0.59
AF006515-1|AAB87383.1| 1944|Homo sapiens CHD3 protein. 34 0.59
AK127507-1|BAC87013.1| 130|Homo sapiens protein ( Homo sapiens ... 32 1.8
X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein. 32 2.4
S81243-1|AAB36006.1| 684|Homo sapiens CHN protein. 32 2.4
D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan rec... 32 2.4
AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfam... 32 2.4
AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfam... 32 2.4
AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfam... 32 2.4
AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfam... 32 2.4
AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfam... 32 2.4
AK128066-1|BAC87258.1| 652|Homo sapiens protein ( Homo sapiens ... 31 4.2
M94131-1|AAA59163.1| 1270|Homo sapiens mucin protein. 31 5.5
M74027-1|AAA59875.1| 573|Homo sapiens mucin protein. 31 5.5
L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein. 31 5.5
BC117331-1|AAI17332.1| 346|Homo sapiens selenoprotein V protein. 31 5.5
AY324825-1|AAP85542.1| 346|Homo sapiens selenoprotein V protein. 31 5.5
AL359706-1|CAI12865.1| 495|Homo sapiens nuclear fragile X menta... 30 7.3
AL354816-1|CAC40689.2| 495|Homo sapiens nuclear fragile X menta... 30 7.3
AF159548-1|AAF15315.1| 495|Homo sapiens nuclear FMRP interactin... 30 7.3
BC019106-1|AAH19106.2| 184|Homo sapiens KIAA1442 protein protein. 30 9.6
AL035460-1|CAB82244.1| 602|Homo sapiens RP5-860F19.3 protein. 30 9.6
>BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongation
regulator 1 protein.
Length = 1077
Score = 35.5 bits (78), Expect = 0.19
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = +1
Query: 532 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXXEFAPG-----LKPPLSSEAPSA 696
P+PA+S TST SS P T TT TS++ TP + P P +S P+
Sbjct: 266 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSTPAP 324
Query: 697 CLTPLVT 717
TP+ T
Sbjct: 325 TATPVQT 331
>AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription
factor CA150 protein.
Length = 1098
Score = 35.5 bits (78), Expect = 0.19
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = +1
Query: 532 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXXEFAPG-----LKPPLSSEAPSA 696
P+PA+S TST SS P T TT TS++ TP + P P +S P+
Sbjct: 266 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSTPAR 324
Query: 697 CLTPLVT 717
TP+ T
Sbjct: 325 TATPVQT 331
>AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongation
regulator 1 variant protein.
Length = 1081
Score = 35.5 bits (78), Expect = 0.19
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = +1
Query: 532 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXXEFAPG-----LKPPLSSEAPSA 696
P+PA+S TST SS P T TT TS++ TP + P P +S P+
Sbjct: 270 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSTPAP 328
Query: 697 CLTPLVT 717
TP+ T
Sbjct: 329 TATPVQT 335
>U91543-1|AAC39923.1| 2000|Homo sapiens zinc-finger helicase protein.
Length = 2000
Score = 33.9 bits (74), Expect = 0.59
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +1
Query: 523 IKPPSPAISATSTRSSNPRFHTPTTPDLTS----ISINPLTPYXXEFAPGLKPPLSSE 684
+ P A S S+R+S+P +PTTP+ ++ + P TP E G++ PL E
Sbjct: 1517 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKE 1574
>BC110648-1|AAI10649.1| 661|Homo sapiens CHD3 protein protein.
Length = 661
Score = 33.9 bits (74), Expect = 0.59
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +1
Query: 523 IKPPSPAISATSTRSSNPRFHTPTTPDLTS----ISINPLTPYXXEFAPGLKPPLSSE 684
+ P A S S+R+S+P +PTTP+ ++ + P TP E G++ PL E
Sbjct: 178 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKE 235
>AF006515-1|AAB87383.1| 1944|Homo sapiens CHD3 protein.
Length = 1944
Score = 33.9 bits (74), Expect = 0.59
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +1
Query: 523 IKPPSPAISATSTRSSNPRFHTPTTPDLTS----ISINPLTPYXXEFAPGLKPPLSSE 684
+ P A S S+R+S+P +PTTP+ ++ + P TP E G++ PL E
Sbjct: 1517 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKE 1574
>AK127507-1|BAC87013.1| 130|Homo sapiens protein ( Homo sapiens
cDNA FLJ45600 fis, clone BRTHA3020369. ).
Length = 130
Score = 32.3 bits (70), Expect = 1.8
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +2
Query: 461 SQCAGHPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQ 601
S C G PF S+ S P++S HP + +H Q P + QPPQ
Sbjct: 85 SNCIG-PFS-SYLTSVSLPHSSIHPSIHPSIHPSFIQTPSGLSQPPQ 129
>X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein.
Length = 443
Score = 31.9 bits (69), Expect = 2.4
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 249 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKV 410
+ +L DL TE + + T SLP++S+ ++GY Y + V P +KV
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>S81243-1|AAB36006.1| 684|Homo sapiens CHN protein.
Length = 684
Score = 31.9 bits (69), Expect = 2.4
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 249 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKV 410
+ +L DL TE + + T SLP++S+ ++GY Y + V P +KV
Sbjct: 93 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 144
>D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan
receptor protein.
Length = 626
Score = 31.9 bits (69), Expect = 2.4
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 249 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKV 410
+ +L DL TE + + T SLP++S+ ++GY Y + V P +KV
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 443
Score = 31.9 bits (69), Expect = 2.4
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 249 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKV 410
+ +L DL TE + + T SLP++S+ ++GY Y + V P +KV
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 31.9 bits (69), Expect = 2.4
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 249 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKV 410
+ +L DL TE + + T SLP++S+ ++GY Y + V P +KV
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 31.9 bits (69), Expect = 2.4
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 249 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKV 410
+ +L DL TE + + T SLP++S+ ++GY Y + V P +KV
Sbjct: 46 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
>AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 31.9 bits (69), Expect = 2.4
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 249 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKV 410
+ +L DL TE + + T SLP++S+ ++GY Y + V P +KV
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 31.9 bits (69), Expect = 2.4
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 249 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKV 410
+ +L DL TE + + T SLP++S+ ++GY Y + V P +KV
Sbjct: 46 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
>AK128066-1|BAC87258.1| 652|Homo sapiens protein ( Homo sapiens
cDNA FLJ46186 fis, clone TESTI4005013. ).
Length = 652
Score = 31.1 bits (67), Expect = 4.2
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = +1
Query: 520 CIKPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXXEFAPGLKPPLSSEAPSAC 699
C P+ TS +S P H +P + ++ LT E P + PP + P C
Sbjct: 18 CYSSGWPSAFGTSPATSFPLAHQ--SPGTSPVTSPQLTHVPLETGPMISPPPTHRTPGTC 75
Query: 700 LT 705
LT
Sbjct: 76 LT 77
>M94131-1|AAA59163.1| 1270|Homo sapiens mucin protein.
Length = 1270
Score = 30.7 bits (66), Expect = 5.5
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +1
Query: 529 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXXEFAPGLKPPLSSEAPSACLTP 708
PP+ S +T + +P T TTP T+ +P+T + P + PS+ +T
Sbjct: 1027 PPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITT 1086
Query: 709 LVT 717
T
Sbjct: 1087 TTT 1089
>M74027-1|AAA59875.1| 573|Homo sapiens mucin protein.
Length = 573
Score = 30.7 bits (66), Expect = 5.5
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +1
Query: 529 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXXEFAPGLKPPLSSEAPSACLTP 708
PP+ S +T + +P T TTP T+ +P+T + P + PS+ +T
Sbjct: 310 PPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITT 369
Query: 709 LVT 717
T
Sbjct: 370 TTT 372
>L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein.
Length = 5179
Score = 30.7 bits (66), Expect = 5.5
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +1
Query: 529 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXXEFAPGLKPPLSSEAPSACLTP 708
PP+ S +T + +P T TTP T+ +P+T + P + PS+ +T
Sbjct: 1652 PPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITT 1711
Query: 709 LVT 717
T
Sbjct: 1712 TTT 1714
>BC117331-1|AAI17332.1| 346|Homo sapiens selenoprotein V protein.
Length = 346
Score = 30.7 bits (66), Expect = 5.5
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +1
Query: 532 PSPAISATSTRSSNPRFHTPT-----TPDLTSISINPLTPYXXEFAPGLKPPLSSEAPSA 696
PS A ++TS R+S P TPT TP T I LTP G P + + AP+
Sbjct: 10 PSSARTSTSVRASTPT-RTPTPLRTPTPVRTRTPIRTLTPVLTPSPAGTSPLVLTPAPAQ 68
Query: 697 CLTPLVT 717
T + T
Sbjct: 69 IPTLVPT 75
>AY324825-1|AAP85542.1| 346|Homo sapiens selenoprotein V protein.
Length = 346
Score = 30.7 bits (66), Expect = 5.5
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +1
Query: 532 PSPAISATSTRSSNPRFHTPT-----TPDLTSISINPLTPYXXEFAPGLKPPLSSEAPSA 696
PS A ++TS R+S P TPT TP T I LTP G P + + AP+
Sbjct: 10 PSSARTSTSVRASTPT-RTPTPLRTPTPVRTRTPIRTLTPVLTPSPAGTSPLVLTPAPAQ 68
Query: 697 CLTPLVT 717
T + T
Sbjct: 69 IPTLVPT 75
>AL359706-1|CAI12865.1| 495|Homo sapiens nuclear fragile X mental
retardation protein interacting protein 1 protein.
Length = 495
Score = 30.3 bits (65), Expect = 7.3
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +1
Query: 529 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXXEFAPGLKPPLSSEAP 690
PP P S+ S P + + S+ P P+ + PG +PP +++P
Sbjct: 46 PPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAP-PPFDAQILPGAQPPFDAQSP 98
>AL354816-1|CAC40689.2| 495|Homo sapiens nuclear fragile X mental
retardation protein interacting protein 1 protein.
Length = 495
Score = 30.3 bits (65), Expect = 7.3
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +1
Query: 529 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXXEFAPGLKPPLSSEAP 690
PP P S+ S P + + S+ P P+ + PG +PP +++P
Sbjct: 46 PPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAP-PPFDAQILPGAQPPFDAQSP 98
>AF159548-1|AAF15315.1| 495|Homo sapiens nuclear FMRP interacting
protein 1 protein.
Length = 495
Score = 30.3 bits (65), Expect = 7.3
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +1
Query: 529 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXXEFAPGLKPPLSSEAP 690
PP P S+ S P + + S+ P P+ + PG +PP +++P
Sbjct: 46 PPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAP-PPFDAQILPGAQPPFDAQSP 98
>BC019106-1|AAH19106.2| 184|Homo sapiens KIAA1442 protein protein.
Length = 184
Score = 29.9 bits (64), Expect = 9.6
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 523 IKPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXXEFAPGLKPPLSSEAPSAC 699
I P SP ++A S+ S T + + +++ FAP L+PP S P AC
Sbjct: 96 IMPSSPPLAAASSMSLPAAAPTTSVFSFSPVNMISAVKQRSAFAPVLRPP--SSPPQAC 152
>AL035460-1|CAB82244.1| 602|Homo sapiens RP5-860F19.3 protein.
Length = 602
Score = 29.9 bits (64), Expect = 9.6
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 523 IKPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXXEFAPGLKPPLSSEAPSAC 699
I P SP ++A S+ S T + + +++ FAP L+PP S P AC
Sbjct: 514 IMPSSPPLAAASSMSLPAAAPTTSVFSFSPVNMISAVKQRSAFAPVLRPP--SSPPQAC 570
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,706,993
Number of Sequences: 237096
Number of extensions: 2164413
Number of successful extensions: 6789
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 6179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6764
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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