Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13p04
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   3.7  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    21   8.5  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    21   8.5  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    21   8.5  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 568 NYTREIVRLMTTLPVTSNRNTLSHSCTERHVQLFL 672
           NY+  +V   T  P T    T S + +++H+++F+
Sbjct: 375 NYS--LVPTTTASPTTEPSTTTSTTISQKHIKVFV 407


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 535 GIVPWNRCLEHNYTREIVRLMTTLPVTSNRNT 630
           G+V WN+  E   T    +++    VT N  T
Sbjct: 66  GVVNWNKIPEGANTTSTTKIIDGHVVTINETT 97


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 535 GIVPWNRCLEHNYTREIVRLMTTLPVTSNRNT 630
           G+V WN+  E   T    +++    VT N  T
Sbjct: 114 GVVNWNKIPEGANTTSTTKIIDGHVVTINETT 145


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 535 GIVPWNRCLEHNYTREIVRLMTTLPVTSNRNT 630
           G+V WN+  E   T    +++    VT N  T
Sbjct: 114 GVVNWNKIPEGANTTSTTKIIDGHVVTINETT 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,107
Number of Sequences: 438
Number of extensions: 2855
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)