Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13o08
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 31 0.11
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 31 0.15
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo... 29 0.59
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa... 27 2.4
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 27 2.4
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 3.1
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.1
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 26 4.1
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz... 26 4.1
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 26 5.5
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 25 7.2
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 25 7.2
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 7.2
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce... 25 7.2
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy... 25 9.5
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 25 9.5
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 25 9.5
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 31.5 bits (68), Expect = 0.11
Identities = 23/84 (27%), Positives = 39/84 (46%)
Frame = -2
Query: 545 LTP*SYTVPRKMLLVPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAMRKLATRALLSFTF 366
L P + ++ R LL +L P T S++ +A + N L C+ K ++L
Sbjct: 731 LCPKNSSIIRHALLAKLVLFPENTADSLNEVLAA---YKNTLDLCSQDKRKQSSVLKINL 787
Query: 365 NRLFSSDSTDSLLCPKLGDASVKE 294
++LF+ S SL +LG V +
Sbjct: 788 SKLFTLHSCLSLALQRLGYGDVSK 811
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 31.1 bits (67), Expect = 0.15
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -2
Query: 647 PLNTINMDLNSLISKFAVPRVMVTLLDVLAAFGDLTP*SYTVPRKMLLVPTLLEPSLTMS 468
P+ + L L+S A R T L + A G + + PR++L V EP+ + S
Sbjct: 384 PMQKLQQQLQRLVSS-AKERPKATQLSLEGALGKIAVNTVRTPRQLLNVKRPTEPASSNS 442
Query: 467 SID--SGFS 447
S++ SGFS
Sbjct: 443 SLNNFSGFS 451
>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 385
Score = 29.1 bits (62), Expect = 0.59
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -1
Query: 606 KVCG--AARHGHITRCAGRVWRFNSIVVYGAQKNAVSAHF 493
K+CG A HGH R R+W F + Y +K ++ F
Sbjct: 39 KICGENARAHGHHFRSKVRMWVFEEEIEYKGEKRKLTEVF 78
>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
Nse6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 522
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = -2
Query: 503 VPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAMRKLATRALLSFTF---NRLFSSDSTDS 333
+P L P +S+I + +W+ +LS + R ++FT + + DS S
Sbjct: 318 LPISLNPDFLISNIHKVSESPRVWVTILSSLSRSCQKFRKKIAFTLFVGKQSKNDDSDFS 377
Query: 332 LLCPKLGDAS 303
LC +L + S
Sbjct: 378 SLCQRLDEIS 387
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = +2
Query: 29 SAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 181
S FG+ +C+ + FT S K W N +V ++H +N+
Sbjct: 120 SFFGNISAIFCDDKFPYAYATFTFSDKPSFTSIYRWNVTNSNVTIEHFYNV 170
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 466 DDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTR 591
D I + G NK S+ + T+ + SPN+ +T+SN T+
Sbjct: 891 DSIKRLGDNKFEDKSLRICTIPNSIFDSPNSHTTNSNSFFTK 932
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 65 QFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 181
Q + A + ++L + P WEND LLK H +
Sbjct: 750 QLMVANLDTYSLDCYEIHEFPSEWENDYAPFLLKEHHKV 788
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 18 WSTSLRSAATLLTIANSLSRPFSKFLRSAVKSL 116
WSTS ++LL I + P SK L +KS+
Sbjct: 359 WSTSWEMLSSLLAIDFDVLLPHSKILWECIKSV 391
>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 322
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 469 DIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRGTANFDIKEFK 624
D +KE + K +S+F ++Y PNA+ N T ++D++E +
Sbjct: 64 DSIKEKTEKTKLSSLFYAGKHEYFCVYPNASLIKQNSTT---EPSYDLQELR 112
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 545 LTP*SYTVPRKMLLVPTLLEPSLTMSSIDSG 453
LTP +P+ ++L+P L+ L S+I SG
Sbjct: 673 LTPGQLVLPKNLVLLPILILAVLKSSAIRSG 703
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 521 PRKMLLVPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAM-RKL 396
P + ++ PT++E + ++ D +S W N SP ++ RKL
Sbjct: 514 PNREIIQPTIVESTSFLAWKDEAYSLGMEWANAYSPDSISRKL 556
>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 541
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -2
Query: 593 PRVMVTLLDVLAAFGDLTP*SYTVPRKMLLVPTL 492
P V++ V AF +TP YTVP+ +++PTL
Sbjct: 384 PPVLMVPYRVKKAF-PITP-DYTVPKDAMVIPTL 415
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 412 HGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTM 585
+G KL + E PLS +D++ GSN T+ +F ++ G +S + NV++
Sbjct: 508 NGSMKLDSIQ-GEIPLSNNDVLYRGSNLRNTSELFALVIFT-GEESKIRMNAVRNVSV 563
>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +1
Query: 295 SLTEASPSLGQSSESVESDENKRLNVKLN--NARVANLRIAHGDNKLSQ 435
SLT+A SL + S+SVE + +L+ +L+ ++AN R G L Q
Sbjct: 16 SLTDAIDSLDKRSDSVEV-KIAKLDAQLSVFQQKIANTRPGPGQTALKQ 63
>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 613
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = -1
Query: 558 RVWRFNSIVVYGAQKNAVSAHFVGALFDYVVYR*RFFGNIHLAQFIIAVCDAQIG 394
++W FN ++Y +AHF ++ + V + NI L+ + V +G
Sbjct: 182 KLWAFNHPLMYPKSAIVFNAHFYSSIMNEVAEKANAGFNISLSDYWGRVISRTLG 236
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 442 IAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTS 570
I +PL + + K + + S +LGT S N+ +TS
Sbjct: 396 IFNQPLRSESLEKSSKSPISAQSSYLGTPLKNDENSSNSGATS 438
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 406 IAHGDNKLSQMYIAEKPLSIDDIVKEGSNKV 498
I HG+NK ++ IA I DIV +N V
Sbjct: 274 IVHGNNKNARKNIATLKSKIRDIVNSDANVV 304
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,132
Number of Sequences: 5004
Number of extensions: 52491
Number of successful extensions: 171
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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