Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13o08
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036700-2|AAB88365.1|  550|Caenorhabditis elegans Hypothetical ...    32   0.31 
Z81527-14|CAB04278.2|  506|Caenorhabditis elegans Hypothetical p...    31   0.94 
Z79753-8|CAB02089.2|  506|Caenorhabditis elegans Hypothetical pr...    31   0.94 
Z75530-8|CAA99792.2|  405|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AC024798-2|AAK29923.1|  352|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z93390-6|CAB07675.4|  816|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z93390-1|CAE46674.1|  540|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z80214-7|CAC42261.2|  816|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U23169-7|AAL02449.1|  512|Caenorhabditis elegans Arginyl aa-trna...    29   3.8  
Z66519-14|CAA91377.2| 1146|Caenorhabditis elegans Hypothetical p...    28   5.0  
U56101-1|AAC47459.1| 1167|Caenorhabditis elegans AGE-1 protein.        28   5.0  
AL110499-5|CAB57914.1| 1146|Caenorhabditis elegans Hypothetical ...    28   5.0  
U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>AF036700-2|AAB88365.1|  550|Caenorhabditis elegans Hypothetical
           protein M04G7.2 protein.
          Length = 550

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
 Frame = +1

Query: 298 LTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMY-IAEKPLSIDDI 474
           LT  SPS  ++S+S+E + ++  N  ++ A     R A+   KL + + ++ + +++DD 
Sbjct: 209 LTADSPSSRRTSKSLEENSSETTNDSISLADDEETREAY--RKLFKDFAMSSQKMTLDDF 266

Query: 475 VKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNV 579
            +E SN  G     L TV+++ V   N  +  SN+
Sbjct: 267 KQEFSNLPGDPPSDLCTVFNHPVN--NKKNRYSNI 299


>Z81527-14|CAB04278.2|  506|Caenorhabditis elegans Hypothetical
           protein F35E12.8 protein.
          Length = 506

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = +1

Query: 364 LNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVK-----EGSNKVGTNSIFLGTV 528
           LN+ L   +   L     DN +  + + ++    D ++K     +G N    NS F+G +
Sbjct: 145 LNLNLQPTQTYTLESPTNDNVVINVALVDQIGKTDIVIKLIYVYDGPN---VNSRFVGNL 201

Query: 529 YDYGVKSPNAASTSSNVT 582
           YDY V SP    +S N T
Sbjct: 202 YDY-VNSPTLMKSSGNST 218


>Z79753-8|CAB02089.2|  506|Caenorhabditis elegans Hypothetical
           protein F35E12.8 protein.
          Length = 506

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = +1

Query: 364 LNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVK-----EGSNKVGTNSIFLGTV 528
           LN+ L   +   L     DN +  + + ++    D ++K     +G N    NS F+G +
Sbjct: 145 LNLNLQPTQTYTLESPTNDNVVINVALVDQIGKTDIVIKLIYVYDGPN---VNSRFVGNL 201

Query: 529 YDYGVKSPNAASTSSNVT 582
           YDY V SP    +S N T
Sbjct: 202 YDY-VNSPTLMKSSGNST 218


>Z75530-8|CAA99792.2|  405|Caenorhabditis elegans Hypothetical
           protein C47E8.3 protein.
          Length = 405

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = -2

Query: 530 YTVPRKMLLVPTLLEPSLTMSSIDSGFSAIYIWLN-LLSPCAMRKLATRALLSFTFNRLF 354
           Y + + + +  T+ E ++  SS++ GF  +Y +LN ++S   +     R  + F  NRL 
Sbjct: 275 YLLSQSLQVFLTVWE-TINRSSLEDGFPTMYSYLNDIVSIFTLLASCLRFPIYFCCNRLI 333

Query: 353 SSDSTDSL 330
            + S D+L
Sbjct: 334 HTASVDTL 341


>AC024798-2|AAK29923.1|  352|Caenorhabditis elegans Hypothetical
           protein Y48G9A.9a protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 286 NLNSLTEASPSLGQSSESVESDENKRLNVK-LNNARVANLRIAHGDNKLSQMY 441
           N N++ E  P+  QSS   E+D++ R  V+ LNN  +A  ++  G   L++ Y
Sbjct: 17  NNNNVNEKRPASAQSSNGTETDDHHRKYVETLNNFIIATEKL--GIEGLAKQY 67


>Z93390-6|CAB07675.4|  816|Caenorhabditis elegans Hypothetical
           protein T23B5.3a protein.
          Length = 816

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +1

Query: 274 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 453
           TNA  LN++T ++ S   SSES  S   +  + K  +   A+ ++ H + + +  Y  + 
Sbjct: 163 TNATILNAMTASTSSNDSSSESGVSGVKEAKDEKKKSKIQADEKLRHEERQSTSDYTDDD 222

Query: 454 PL 459
           P+
Sbjct: 223 PI 224


>Z93390-1|CAE46674.1|  540|Caenorhabditis elegans Hypothetical
           protein T23B5.3b protein.
          Length = 540

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +1

Query: 274 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 453
           TNA  LN++T ++ S   SSES  S   +  + K  +   A+ ++ H + + +  Y  + 
Sbjct: 163 TNATILNAMTASTSSNDSSSESGVSGVKEAKDEKKKSKIQADEKLRHEERQSTSDYTDDD 222

Query: 454 PL 459
           P+
Sbjct: 223 PI 224


>Z80214-7|CAC42261.2|  816|Caenorhabditis elegans Hypothetical
           protein T23B5.3a protein.
          Length = 816

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +1

Query: 274 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 453
           TNA  LN++T ++ S   SSES  S   +  + K  +   A+ ++ H + + +  Y  + 
Sbjct: 163 TNATILNAMTASTSSNDSSSESGVSGVKEAKDEKKKSKIQADEKLRHEERQSTSDYTDDD 222

Query: 454 PL 459
           P+
Sbjct: 223 PI 224


>U23169-7|AAL02449.1|  512|Caenorhabditis elegans Arginyl aa-trna
           synthetase protein2 protein.
          Length = 512

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 62  EQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNLN 184
           E+F   ++E F    K V     NW+ND   +L + + +++
Sbjct: 131 EEFRAKVYETFVAMEKAVTGEQENWKNDEHMMLWQQIKDIS 171


>Z66519-14|CAA91377.2| 1146|Caenorhabditis elegans Hypothetical
           protein B0334.8 protein.
          Length = 1146

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -1

Query: 570 RCAGRVWRFNSIVVYGAQKNAVSAH-FVGALFDYVVYR*RFFGNIHLAQFIIAVCDAQIG 394
           RC  RV R  ++     Q + V+ H F+  L   + Y  R    + +     A+CD +IG
Sbjct: 656 RCTDRVIRKFAVEKLNEQLSPVTFHLFILPLIQALKYEPRAQSEVGMMLLTRALCDYRIG 715

Query: 393 H 391
           H
Sbjct: 716 H 716


>U56101-1|AAC47459.1| 1167|Caenorhabditis elegans AGE-1 protein.
          Length = 1167

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -1

Query: 570 RCAGRVWRFNSIVVYGAQKNAVSAH-FVGALFDYVVYR*RFFGNIHLAQFIIAVCDAQIG 394
           RC  RV R  ++     Q + V+ H F+  L   + Y  R    + +     A+CD +IG
Sbjct: 677 RCTDRVIRKFAVEKLNEQLSPVTFHLFILPLIQALKYEPRAQSEVGMMLLTRALCDYRIG 736

Query: 393 H 391
           H
Sbjct: 737 H 737


>AL110499-5|CAB57914.1| 1146|Caenorhabditis elegans Hypothetical
           protein B0334.8 protein.
          Length = 1146

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -1

Query: 570 RCAGRVWRFNSIVVYGAQKNAVSAH-FVGALFDYVVYR*RFFGNIHLAQFIIAVCDAQIG 394
           RC  RV R  ++     Q + V+ H F+  L   + Y  R    + +     A+CD +IG
Sbjct: 656 RCTDRVIRKFAVEKLNEQLSPVTFHLFILPLIQALKYEPRAQSEVGMMLLTRALCDYRIG 715

Query: 393 H 391
           H
Sbjct: 716 H 716


>U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical
           protein C01G5.4 protein.
          Length = 1079

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 559 ASTSSNVTMTRGTANFD--IKEFKSMFIVFKGIT 654
           A+TS+NVT  + T NFD  +K    +  V  GIT
Sbjct: 133 ATTSTNVTNAKSTTNFDGYLKHISVIAHVANGIT 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,622,382
Number of Sequences: 27780
Number of extensions: 290959
Number of successful extensions: 836
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)