Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13m24
(545 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15955-1|AAA67443.1| 95|Apis mellifera defensin precursor prot... 23 1.5
AY496432-1|AAS75803.1| 95|Apis mellifera defensin/royalisin pr... 23 1.5
AJ308527-1|CAC33429.1| 57|Apis mellifera defensin protein. 22 4.7
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 21 6.2
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 21 6.2
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 6.2
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 21 8.2
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 21 8.2
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 21 8.2
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 21 8.2
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 21 8.2
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 21 8.2
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 21 8.2
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 21 8.2
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 21 8.2
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 21 8.2
>U15955-1|AAA67443.1| 95|Apis mellifera defensin precursor
protein.
Length = 95
Score = 23.4 bits (48), Expect = 1.5
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 120 KVYCSAF*FINRSR*TSCAINCMYIGR-GSSC 28
+V C F + ++CA NC+ +G+ G C
Sbjct: 43 RVTCDLLSFKGQVNDSACAANCLSLGKAGGHC 74
>AY496432-1|AAS75803.1| 95|Apis mellifera defensin/royalisin
precursor protein.
Length = 95
Score = 23.4 bits (48), Expect = 1.5
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 120 KVYCSAF*FINRSR*TSCAINCMYIGR-GSSC 28
+V C F + ++CA NC+ +G+ G C
Sbjct: 43 RVTCDLLSFKGQVNDSACAANCLSLGKAGGHC 74
>AJ308527-1|CAC33429.1| 57|Apis mellifera defensin protein.
Length = 57
Score = 21.8 bits (44), Expect = 4.7
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -3
Query: 120 KVYCSAF*FINRSR*TSCAINCMYIGR-GSSC 28
+V C F + ++CA NC +G+ G C
Sbjct: 18 RVTCDLLSFKGQVNDSACAANCHSLGKAGGHC 49
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 21.4 bits (43), Expect = 6.2
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +3
Query: 327 YLQYWFLLSFLMSVALN 377
YL+ WF L + S+ L+
Sbjct: 164 YLRTWFFLDLISSIPLD 180
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.4 bits (43), Expect = 6.2
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +3
Query: 327 YLQYWFLLSFLMSVALN 377
YL+ WF L + S+ L+
Sbjct: 164 YLRTWFFLDLISSIPLD 180
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.4 bits (43), Expect = 6.2
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +3
Query: 327 YLQYWFLLSFLMSVALN 377
YL+ WF L + S+ L+
Sbjct: 164 YLRTWFFLDLISSIPLD 180
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.0 bits (42), Expect = 8.2
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 537 LNC*QKQNLYPFDCP 493
L+C + N++PFD P
Sbjct: 184 LSCQGRLNIFPFDDP 198
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 21.0 bits (42), Expect = 8.2
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 537 LNC*QKQNLYPFDCP 493
L+C + N++PFD P
Sbjct: 184 LSCQGRLNIFPFDDP 198
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.0 bits (42), Expect = 8.2
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 537 LNC*QKQNLYPFDCP 493
L+C + N++PFD P
Sbjct: 235 LSCQGRLNIFPFDDP 249
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.0 bits (42), Expect = 8.2
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 537 LNC*QKQNLYPFDCP 493
L+C + N++PFD P
Sbjct: 184 LSCQGRLNIFPFDDP 198
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.0 bits (42), Expect = 8.2
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +3
Query: 12 ASLNSNTSSHALYTYNLSHKMFN 80
+SL++NT + Y YN ++ +N
Sbjct: 82 SSLSNNTIHNNNYKYNYNNNNYN 104
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.0 bits (42), Expect = 8.2
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +3
Query: 12 ASLNSNTSSHALYTYNLSHKMFN 80
+SL++NT + Y YN ++ +N
Sbjct: 82 SSLSNNTIHNNNYKYNYNNNNYN 104
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.0 bits (42), Expect = 8.2
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +3
Query: 12 ASLNSNTSSHALYTYNLSHKMFN 80
+SL++NT + Y YN ++ +N
Sbjct: 83 SSLSNNTIHNNNYKYNYNNNNYN 105
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.0 bits (42), Expect = 8.2
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +3
Query: 12 ASLNSNTSSHALYTYNLSHKMFN 80
+SL++NT + Y YN ++ +N
Sbjct: 83 SSLSNNTIHNNNYKYNYNNNNYN 105
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.0 bits (42), Expect = 8.2
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +3
Query: 12 ASLNSNTSSHALYTYNLSHKMFN 80
+SL++NT + Y YN ++ +N
Sbjct: 83 SSLSNNTIHNNNYKYNYNNNNYN 105
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.0 bits (42), Expect = 8.2
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +3
Query: 12 ASLNSNTSSHALYTYNLSHKMFN 80
+SL++NT + Y YN ++ +N
Sbjct: 83 SSLSNNTIHNNNYKYNYNNNNYN 105
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,446
Number of Sequences: 438
Number of extensions: 3593
Number of successful extensions: 17
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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