Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13m09
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    27   0.21 
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    25   0.66 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.6  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.1  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 453 KNANIHQNIDGQNHYRRNGTRRDGGR 530
           +NAN +QN D QN  ++NG R++  R
Sbjct: 440 QNAN-NQNADNQNANKQNGNRQNDNR 464



 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 453 KNANIHQNIDGQNHYRRNGTRRDGGR 530
           +N N  QN + QN  R+N  +R+G R
Sbjct: 495 QNGN-KQNDNKQNGNRQNDNKRNGNR 519


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 540 LLEIGHRLCGFRFGGN 493
           +LE+GH +CG RF GN
Sbjct: 118 MLELGHEVCG-RFYGN 132


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 358 VVWVSAACCTIPP 396
           +VW+ AAC ++PP
Sbjct: 164 LVWLGAACISLPP 176


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 361  VWVSAACCTIPPSVEARAHSQQPLSFISNSVKMQ 462
            VW    C  +  +++ R  ++   + +SNSVKMQ
Sbjct: 1521 VWPDNGCPILYFTIQYRPINEFHWTLVSNSVKMQ 1554


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 361  VWVSAACCTIPPSVEARAHSQQPLSFISNSVKMQ 462
            VW    C  +  +++ R  ++   + +SNSVKMQ
Sbjct: 1517 VWPDNGCPILYFTIQYRPINEFHWTLVSNSVKMQ 1550


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 188 YNFWQQSALLPHCIDHLAQVARCYIKSFESIYR 286
           YN W+  + L +C D L +  R  ++  ES  R
Sbjct: 272 YNTWEPISNLINCSDILEEFERNRLQLLESFKR 304


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = +1

Query: 358 VVWVSAACCTIPPSVE 405
           V+W+ A C  +P +++
Sbjct: 177 VIWLLALCLAVPQAIQ 192


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 227 CNGATRQTVARNYRS*RR 174
           C   TRQ +  +YRS RR
Sbjct: 121 CENETRQGLTLHYRSKRR 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,956
Number of Sequences: 438
Number of extensions: 4446
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)