Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13m07
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   0.71 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   0.71 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   0.71 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.8  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 578 SSPPREFRYFCPPG 537
           S  P ++RYFCP G
Sbjct: 276 SENPADYRYFCPDG 289


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 578 SSPPREFRYFCPPG 537
           S  P ++RYFCP G
Sbjct: 276 SENPADYRYFCPDG 289


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 578 SSPPREFRYFCPPG 537
           S  P ++RYFCP G
Sbjct: 276 SENPADYRYFCPDG 289


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 20/62 (32%), Positives = 26/62 (41%)
 Frame = +1

Query: 130 TVTILRKKPPKASALKTEQAVNAARRQGIPVDTQQKYGAGTNKQHVTTKNTAKLDRETEE 309
           T TI   K  KA  + +      ARR+GI +       A       TT + A LDR  E 
Sbjct: 479 TGTISANKASKAFGIPSSTLYKIARREGIRL-------AAPFNASPTTWSPADLDRALEA 531

Query: 310 LR 315
           +R
Sbjct: 532 IR 533


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -2

Query: 549 LSARRLQWLA--SFFSTKFYSNCPFNFSK 469
           ++A    WL+  SFF   F+  CP  F +
Sbjct: 409 VNAGMWMWLSCSSFFQQFFHCYCPVRFGR 437


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 133 VTILRKKPPKASAL 174
           +TIL KKP ++S L
Sbjct: 544 ITILEKKPSRSSTL 557


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,899
Number of Sequences: 438
Number of extensions: 3960
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)