Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13l02
         (352 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   2.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   3.2  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   4.2  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    20   7.4  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    20   9.8  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   9.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   9.8  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 83  APVSPDLKPSSVPDLRVAELQETPR 9
           A VSP LK   +  LRVA+    P+
Sbjct: 559 AVVSPRLKVHGIRGLRVADASVQPQ 583


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 164 LTKEGRTGPGGKPSSQKSPHRA 229
           +T++ +    G P  Q SPH++
Sbjct: 9   ITQQSQQPSSGAPGPQPSPHQS 30


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 246 GRYPTTARCGDF 211
           G  P+T+ CG+F
Sbjct: 348 GNQPSTSECGEF 359


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 72  SRPQTILRTRPPSSRITGDATL 7
           +RP  I + RPP  R+  +A L
Sbjct: 72  NRPVYIPQPRPPHPRLRREAEL 93



 Score = 20.2 bits (40), Expect = 7.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 72  SRPQTILRTRPPSSRITGDATL 7
           +RP  I + RPP  R+  +A L
Sbjct: 128 NRPVYIPQPRPPHPRLRREAEL 149


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 186 GQGGNPAAKSPR 221
           G GG P  K PR
Sbjct: 13  GNGGTPEEKRPR 24


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 168 VNLHFPDSSGESILTP 121
           + LH  D + ESIL P
Sbjct: 335 LELHTEDRAAESILEP 350


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 76  TGAEWPML 99
           TGAEWP L
Sbjct: 748 TGAEWPGL 755


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,404
Number of Sequences: 438
Number of extensions: 2239
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)