Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt15c19
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 251 3e-67
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 250 5e-67
08_02_0657 - 19749835-19751942,19753123-19753561 178 3e-45
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 33 0.15
07_03_1644 - 28338535-28339103,28339512-28340326,28341104-283412... 29 3.1
06_01_0057 - 483710-484309 29 3.1
11_04_0301 + 16142236-16142945,16143748-16144247,16144557-161446... 27 9.6
09_04_0254 + 16131779-16132475,16132609-16132768,16132944-161329... 27 9.6
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 27 9.6
03_02_0401 - 8146758-8146912,8147151-8147235,8147502-8147567,814... 27 9.6
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 251 bits (615), Expect = 3e-67
Identities = 113/176 (64%), Positives = 138/176 (78%)
Frame = +1
Query: 112 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 291
+D K D STAIL RK PNRL+V+EA +DDNSV+ + ME+LQLFRGDTVLLKGK+
Sbjct: 11 SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLKGKK 70
Query: 292 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 471
RK+T+CIVL+DD C + KIRM DVVS+ CP VKYGKRVHILPIDD+V
Sbjct: 71 RKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTV 130
Query: 472 EGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPD 639
EG+TGNLF+ +LKPYF+EAYRP+ + D F+VRGGMR+VEFKV+ETDP+ +CIVAPD
Sbjct: 131 EGITGNLFDAFLKPYFLEAYRPLRKGDLFLVRGGMRSVEFKVIETDPAEYCIVAPD 186
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 250 bits (613), Expect = 5e-67
Identities = 115/176 (65%), Positives = 138/176 (78%)
Frame = +1
Query: 112 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 291
AD K D STAIL RK PNRL+V+EA +DDNSVVAL ME+LQLFRGDTVLLKGK+
Sbjct: 11 ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKK 70
Query: 292 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 471
RK+T+CIVL+D+ C + KIRM DVVS+ C VKYGKRVHILPIDD+V
Sbjct: 71 RKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHILPIDDTV 130
Query: 472 EGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPD 639
EG+TGNLF+ +LKPYF+EAYRP+ + D F+VRGGMR+VEFKV+ETDP+ +CIVAPD
Sbjct: 131 EGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPTEYCIVAPD 186
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 178 bits (433), Expect = 3e-45
Identities = 83/166 (50%), Positives = 117/166 (70%), Gaps = 5/166 (3%)
Frame = +1
Query: 133 DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRK 297
D STAIL +K PNRL+ ++A V+ DNS V LS+A ME+L +FRGD V L+G+RR+
Sbjct: 16 DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75
Query: 298 ETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEG 477
E VC D++CPD ++R+ D+V++ PCP+++ KRV + P DDSVEG
Sbjct: 76 EAVCYAQKDESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRVQLRPFDDSVEG 135
Query: 478 LTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPS 615
++G+LFE YLKPYFM+A RP+ + D F+VRG M AVEFKV++T+P+
Sbjct: 136 ISGDLFEPYLKPYFMDALRPVKKGDRFLVRGHMHAVEFKVMDTEPN 181
>03_05_0754 + 27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 507 EAVLHGGLPSDPS*RHLHGPRGHARRRVQSGRNRSITILHRG 632
E++ H L + S HLHG G RR + +GR R+I +L G
Sbjct: 1248 ESLPHETLQASSSAVHLHGHHGRLRRFLAAGRLRAIDVLGHG 1289
>07_03_1644 -
28338535-28339103,28339512-28340326,28341104-28341205,
28342469-28342594,28342782-28343071
Length = 633
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 603 FDHFELDGAHAPADHEGVVTMDRTVSLHEVRLQVYFE 493
F+ L+ DHE V+ D+ VSL +V++ Y+E
Sbjct: 401 FEFIPLEDGLRLTDHEEVIENDKLVSLVDVKVGCYYE 437
>06_01_0057 - 483710-484309
Length = 199
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 137 YRPRSSVARTDPTVSLSKKQSAMTTQS-WHFHRPKWSNFNSSVVTQSCSR 283
Y P ART P ++ + A S W F WS+ S V+T+ SR
Sbjct: 62 YFPLGPAARTSPAGTVLCFEDARGGDSTWRFRYSYWSSSQSYVITKGWSR 111
>11_04_0301 +
16142236-16142945,16143748-16144247,16144557-16144649,
16144879-16145005,16145265-16145468,16145587-16145692
Length = 579
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = +2
Query: 248 FNSSVVTQSCSRANAARKPFA----SCSQTIIALMRKF 349
+NSS + SC+ A ++PF SC+ ++ L R+F
Sbjct: 475 YNSSRLLYSCTAREAEQQPFGCLTDSCTDSLTVLKRRF 512
>09_04_0254 +
16131779-16132475,16132609-16132768,16132944-16132992,
16133158-16133271,16133434-16133958,16135538-16135969,
16138882-16138956,16139530-16139625,16140610-16140725,
16140822-16140992,16141080-16141239,16141328-16141513,
16141624-16141752,16141837-16141915,16142034-16142143
Length = 1032
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +1
Query: 469 VEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPF 621
VEG+TG V + F A P + + GG A V PSPF
Sbjct: 569 VEGITGVAMVVLMTVSFTLATHPFRKGEKGGSGGGAAATVLPTVARLPSPF 619
>04_04_0824 -
28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 522 GGLPSDPS*RHLHGPRGHARRRVQSGRNRSITILHR 629
GG+P + GPRG R V SG +R++ LH+
Sbjct: 213 GGMPQP----YYGGPRGSGGRSVPSGSSRTVPELHQ 244
>03_02_0401 -
8146758-8146912,8147151-8147235,8147502-8147567,
8147744-8147802,8147911-8148013,8148227-8148358,
8148447-8148527,8148729-8148821,8148978-8149061,
8149242-8149300,8149405-8149481,8149639-8149789,
8150302-8150437
Length = 426
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 523 EAYRPIHRDDTFMVRGGMRAVE 588
+AYRP H D T+ + G+RAV+
Sbjct: 148 KAYRPSHADATYDFKYGVRAVQ 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,254,123
Number of Sequences: 37544
Number of extensions: 375156
Number of successful extensions: 999
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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