Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15c19
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.47 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   4.4  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   7.7  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 25/105 (23%), Positives = 39/105 (37%)
 Frame = -3

Query: 459 NWQYVDSFSIFH*RTRSDGYHIRKTHTKVVSHNTVHPNFLIRAIIV*EHDANGFLAAFAL 280
           +WQ  D  S+        G  + +  ++++     H    + A IV    ++  L     
Sbjct: 240 HWQ--DQMSLPQMLADKIGKMVNQKFSELIQSKPQHARRKVLAGIVQTKGSDAELICVTT 297

Query: 279 EQDCVTTEELKLLHFGL*KCHD*VVIADCFFDNETVGSVLATEDR 145
              CV+ E L +    L  CH  VV   C  +       L TEDR
Sbjct: 298 GTKCVSGEHLSVSGGALNDCHAEVVARRCLCEYLYKQLELHTEDR 342


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 125 LLLSAILFKIYC*NLRTIIIFIT 57
           +LLS+  F++    L TI+IF+T
Sbjct: 1   MLLSSAWFEVIAAVLLTILIFVT 23


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/38 (21%), Positives = 18/38 (47%)
 Frame = +2

Query: 518 SWRLTVRSIVTTPSWSAGACAPSSSKWSKQIHHHFASW 631
           SW   V  +   P W+ G    ++ + ++++H    +W
Sbjct: 155 SWDNVV--VAYEPVWAIGTGKTATPQQAQEVHEKLRNW 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,810
Number of Sequences: 438
Number of extensions: 3719
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)