Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14o08
         (504 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1242 - 35197944-35198118,35198276-35198332,35198780-351988...    30   0.92 
09_06_0294 + 22089915-22091333                                         28   3.7  
09_03_0095 + 12323371-12324411                                         28   3.7  
12_01_0106 - 833236-833568,835657-836098,837117-837227,837427-83...    23   4.5  
11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809...    27   6.5  
03_02_0331 - 7527010-7529352                                           27   6.5  
06_01_0994 + 7719974-7721323                                           27   8.6  

>02_05_1242 -
           35197944-35198118,35198276-35198332,35198780-35198853,
           35198954-35199028,35199295-35199349,35199574-35199647,
           35200446-35200579,35200660-35200746,35200838-35200967
          Length = 286

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 382 CMARALYDNIAESPDELAFRRGDLLTVLEQNTGGSEGW 495
           C  RAL D + +SPD   F R  +++ L+ N    +G+
Sbjct: 159 CQFRALSDQLYQSPDHHEFVRQQIMSQLKSNRDAYDGY 196


>09_06_0294 + 22089915-22091333
          Length = 472

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 347 YPWAGRLCSPHSVWRVLCMITLRSL 421
           + W+GR  SP   W V C I L+ L
Sbjct: 332 FTWSGRSSSPSPSWSVRCSINLQIL 356


>09_03_0095 + 12323371-12324411
          Length = 346

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 375 HTVYGACFV**HCGVSGRASFSKRRPAHRAGAKHRWQR 488
           H VY ACFV     V   A   +R+ A+ AGA   W++
Sbjct: 312 HAVYAACFV----VVCAFARAERRKKAYLAGAAEPWKK 345


>12_01_0106 -
           833236-833568,835657-836098,837117-837227,837427-837755
          Length = 404

 Score = 23.4 bits (48), Expect(2) = 4.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 482 PPVFCSSTVSRSPLRKASSSGDSAMLS 402
           PP   SS  ++SP   A+SS    M++
Sbjct: 211 PPAASSSCAAQSPAAAATSSSSDMMMT 237



 Score = 23.0 bits (47), Expect(2) = 4.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 500 SXQPSLPPVFCSSTV 456
           S +PSLPPV   +TV
Sbjct: 189 SIEPSLPPVILDTTV 203


>11_02_0082 -
           8088169-8088284,8088613-8088697,8090344-8090442,
           8090537-8090609,8090694-8090804,8090901-8091074,
           8091184-8091574,8091662-8092283,8092379-8093251,
           8093294-8093800
          Length = 1016

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 503 HSXQPSLPPVFCSSTVSRSPLRKASSSGDSAM 408
           H  QP++PP   SS+ +RS        G  +M
Sbjct: 395 HDPQPTIPPAMVSSSGNRSSCASTGQVGSQSM 426


>03_02_0331 - 7527010-7529352
          Length = 780

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 491 PSLPPVFCSSTVSRSPLRKASSSGDSAMLSYKARAIHCVGSTVS 360
           PS+  VF     S++ +R A++ G +A  +YK R +    S VS
Sbjct: 676 PSISVVFYGGNQSKTVIRTATNVGAAASATYKPR-VEMASSAVS 718


>06_01_0994 + 7719974-7721323
          Length = 449

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 504 AQPPALAATGVLLQHGEQVASSKS*LVRRLRNVIIQSTRHTL 379
           A PP+L +   LL HG ++A+  S  V  LR +     RH L
Sbjct: 221 ASPPSLKSLASLLSHGGELAARVSAAV-VLRELASSGDRHAL 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,699,369
Number of Sequences: 37544
Number of extensions: 221184
Number of successful extensions: 569
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)