Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt14o08
(504 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical... 33 0.16
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei... 31 0.47
U67954-1|AAB52605.2| 826|Caenorhabditis elegans Hypothetical pr... 30 0.83
U29082-8|AAA68405.1| 228|Caenorhabditis elegans Sex muscle abno... 30 0.83
S88446-1|AAB21850.1| 228|Caenorhabditis elegans sem-5 protein. 30 0.83
Z70211-4|CAA94159.1| 825|Caenorhabditis elegans Hypothetical pr... 29 1.4
U97407-8|AAN84851.1| 397|Caenorhabditis elegans Prion-like-(q/n... 29 1.4
U97407-7|AAB52480.2| 457|Caenorhabditis elegans Prion-like-(q/n... 29 1.4
AL032631-13|CAA21577.2| 220|Caenorhabditis elegans Hypothetical... 29 1.4
Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical pr... 27 5.8
U28732-6|AAB04903.2| 489|Caenorhabditis elegans Hypothetical pr... 27 7.7
U28732-5|AAT92075.1| 495|Caenorhabditis elegans Hypothetical pr... 27 7.7
L08403-3|AAT92076.1| 335|Caenorhabditis elegans Hypothetical pr... 27 7.7
>AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical
protein Y116A8C.36 protein.
Length = 1097
Score = 32.7 bits (71), Expect = 0.16
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 388 ARALYDNIAESPDELAFRRGDLLTVLEQNTGGSEGW 495
A A+YD A PDEL F+ GD++ V +++ +E W
Sbjct: 1042 ATAVYDYEASQPDELGFKTGDVIIVTDKSE--AEWW 1075
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 391 RALYDNIAESPDELAFRRGDLLTVLEQNTGGSEGW 495
RAL+ A S DEL+F GD++ V Q+ GW
Sbjct: 679 RALFAFEARSEDELSFEPGDVIIVF-QSHAAEPGW 712
>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
protein.
Length = 2427
Score = 31.1 bits (67), Expect = 0.47
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +1
Query: 352 LGRETVLPTQCMARALYDNIAESPDELAFRRGDLLTVLEQNTGGSEGW 495
LGR+ VL ALYD +SP E++ ++GD+LT+L N + W
Sbjct: 983 LGRDCVL-------ALYDYQEKSPREVSMKKGDVLTLL--NASNRDWW 1021
>U67954-1|AAB52605.2| 826|Caenorhabditis elegans Hypothetical
protein F41D9.1 protein.
Length = 826
Score = 30.3 bits (65), Expect = 0.83
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 388 ARALYDNIAESPDELAFRRGDLLTVLEQ 471
ARAL D E +EL FR+ D++T++ +
Sbjct: 529 ARALLDFAREEENELGFRKNDIVTIISE 556
>U29082-8|AAA68405.1| 228|Caenorhabditis elegans Sex muscle
abnormal protein 5 protein.
Length = 228
Score = 30.3 bits (65), Expect = 0.83
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +1
Query: 388 ARALYDNIAESPDELAFRRGDLLTVLEQN 474
A A +D A SPDEL+F+RG+ L VL ++
Sbjct: 3 AVAEHDFQAGSPDELSFKRGNTLKVLNKD 31
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = +1
Query: 391 RALYDNIAESPDELAFRRGDLLTVLEQN 474
+AL+D + ELAF+RGD++T++ ++
Sbjct: 160 QALFDFNPQESGELAFKRGDVITLINKD 187
>S88446-1|AAB21850.1| 228|Caenorhabditis elegans sem-5 protein.
Length = 228
Score = 30.3 bits (65), Expect = 0.83
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +1
Query: 388 ARALYDNIAESPDELAFRRGDLLTVLEQN 474
A A +D A SPDEL+F+RG+ L VL ++
Sbjct: 3 AVAEHDFQAGSPDELSFKRGNTLKVLNKD 31
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = +1
Query: 391 RALYDNIAESPDELAFRRGDLLTVLEQN 474
+AL+D + ELAF+RGD++T++ ++
Sbjct: 160 QALFDFNPQESGELAFKRGDVITLINKD 187
>Z70211-4|CAA94159.1| 825|Caenorhabditis elegans Hypothetical
protein K11E4.4 protein.
Length = 825
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 388 ARALYDNIAESPDELAFRRGDLLTVLEQNTGG 483
ARA + + DEL+F + D++T+ +Q GG
Sbjct: 190 ARAKFQFEGSNNDELSFDKDDIITITQQQEGG 221
>U97407-8|AAN84851.1| 397|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 19,
isoform b protein.
Length = 397
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 391 RALYDNIAESPDELAFRRGDLLTVLEQN 474
RALYD A +EL+F GD++T+ +++
Sbjct: 217 RALYDFEAAESNELSFVAGDIITITDES 244
>U97407-7|AAB52480.2| 457|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 19,
isoform a protein.
Length = 457
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 391 RALYDNIAESPDELAFRRGDLLTVLEQN 474
RALYD A +EL+F GD++T+ +++
Sbjct: 225 RALYDFEAAESNELSFVAGDIITITDES 252
>AL032631-13|CAA21577.2| 220|Caenorhabditis elegans Hypothetical
protein Y106G6H.14 protein.
Length = 220
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 391 RALYDNIAESPDELAFRRGDLLTVLEQ 471
RALYD A S EL F GDL+ V ++
Sbjct: 23 RALYDFQARSAQELTFSEGDLMYVSDE 49
>Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical
protein F46F3.4 protein.
Length = 769
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 394 ALYDNIAESPDELAFRRGDLLTVLEQNTGGSEGW 495
A Y A DEL+F GD LTV+E++ W
Sbjct: 691 AAYGYEAAFEDELSFDAGDELTVIEKDKVDKNWW 724
>U28732-6|AAB04903.2| 489|Caenorhabditis elegans Hypothetical
protein F45E1.7a protein.
Length = 489
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 388 ARALYDNIAESPDELAFRRGDLLTVLEQNTGGSEGW 495
A LYD DE+A R+G+++ VL + S GW
Sbjct: 432 AVVLYDYAPAEGDEIALRKGEMIEVLTE--PDSLGW 465
>U28732-5|AAT92075.1| 495|Caenorhabditis elegans Hypothetical
protein F45E1.7b protein.
Length = 495
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 388 ARALYDNIAESPDELAFRRGDLLTVLEQNTGGSEGW 495
A LYD DE+A R+G+++ VL + S GW
Sbjct: 438 AVVLYDYAPAEGDEIALRKGEMIEVLTE--PDSLGW 471
>L08403-3|AAT92076.1| 335|Caenorhabditis elegans Hypothetical
protein F42H10.3 protein.
Length = 335
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 391 RALYDNIAESPDELAFRRGDLLTVLEQNTGG 483
+A+YD A DE++F GD++ E+ G
Sbjct: 272 KAIYDYAAADKDEISFLEGDIIVNCEKIDDG 302
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,532,996
Number of Sequences: 27780
Number of extensions: 184191
Number of successful extensions: 491
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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