Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14o08
         (504 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   1.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.4  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   3.2  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   9.6  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 462 HGEQVASSKS*LVRRLRNVIIQSTRHTLCGEHSL 361
           H EQ++  +  L RRL  +  Q+  H L G H L
Sbjct: 110 HKEQLSREQRFLRRRLEQLTNQTGLHGLHGLHGL 143


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 421 PDELAFRRGDLLTVLEQNTGGSEGWXL 501
           P+E A  RGDL+ +L+Q       W +
Sbjct: 557 PEEDAPLRGDLVRILKQANQSVPDWMM 583


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 431 SSSGDSAMLSYKARAIH 381
           SSSGDS + S+ +  IH
Sbjct: 69  SSSGDSPVSSHSSNGIH 85


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 125 LINLMKTQKLNSLNSNAATYKKRDKIETTN 36
           L  + + +KL S  S + +   RDK  T+N
Sbjct: 66  LRRIREIEKLGSERSKSRSPDSRDKSNTSN 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,445
Number of Sequences: 438
Number of extensions: 2210
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)