Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt13c19
(408 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 0.64
SPAC23C11.17 |||mitochondrial inner membrane protein involved in... 26 2.6
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 26 2.6
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 25 3.4
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po... 25 4.5
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 25 6.0
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 25 6.0
SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr... 24 7.9
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 24 7.9
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 24 7.9
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.9 bits (59), Expect = 0.64
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -3
Query: 289 FSAVLPT--SGLFYGHSVTAFDSVFLLLRTESSSGSDIRWTVLSHSTQTTFPAA 134
FS+ + T SG+ + F SV +L + +SS S ++ S ST +TF +A
Sbjct: 553 FSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSA 606
>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
potassium ion transport|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 2.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 161 QYTNHLPCGTDPLVQWNLFHR 99
+Y N GTDPL+++N+ HR
Sbjct: 295 RYMNLNAFGTDPLLRYNIRHR 315
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 25.8 bits (54), Expect = 2.6
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -1
Query: 228 PSFCCLGQSPVLALISDGQSSATVHKPPSLRHGSSCSMESISQKSS 91
PS +G L DG T LRH S E++SQ +S
Sbjct: 426 PSVPLMGTDQPLENYHDGNGEQTEECLRDLRHNQSQDFETVSQDTS 471
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 3.4
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -1
Query: 204 SPVLALISDGQSSATVHKPPSLRHGSSCSMESISQK 97
SP + +G H P HG S S +I QK
Sbjct: 569 SPAHIMYPEGSPGFIQHSPNGFTHGHSASPVNIGQK 604
>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 213
Score = 25.0 bits (52), Expect = 4.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 98 FCEIDSIEQEDPCRREGGLC 157
FC +DS+ E P +E GLC
Sbjct: 129 FCVVDSVAVESPA-QEAGLC 147
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 24.6 bits (51), Expect = 6.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 131 PCRREGGLCTVAEDCPSDIRARTGLCPKQQ 220
P +R+G + + + C SD R R + PK Q
Sbjct: 418 PLKRDGHV--IIDVCDSDARLRRNIVPKSQ 445
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 24.6 bits (51), Expect = 6.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 131 PCRREGGLCTVAEDCPSDIRARTGLCPKQQ 220
P +R+G + + + C SD R R + PK Q
Sbjct: 418 PLKRDGHV--IIDVCDSDARLRRNIVPKSQ 445
>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 179
Score = 24.2 bits (50), Expect = 7.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 180 DGQSSATVHKPPSLRHGSSCSM 115
+G S TVH P++ H S C++
Sbjct: 93 EGDSYITVHITPTIPHCSMCTL 114
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 24.2 bits (50), Expect = 7.9
Identities = 11/53 (20%), Positives = 24/53 (45%)
Frame = -1
Query: 237 HSIPSFCCLGQSPVLALISDGQSSATVHKPPSLRHGSSCSMESISQKSSSLFP 79
H I F P+ A D +S +VH+ + ++ ++S++++ P
Sbjct: 437 HDISQFNHRNDPPITAASVDSSNSFSVHRSSTNHSSTNSGSPNLSRRNNLAIP 489
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 24.2 bits (50), Expect = 7.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 294 KHSPPCFRHLVSFTD 250
+H P FRH+ S+TD
Sbjct: 721 EHRPNAFRHMPSYTD 735
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,776,586
Number of Sequences: 5004
Number of extensions: 37191
Number of successful extensions: 119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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