Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10g17
         (453 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26440.1 68415.m03172 pectinesterase family protein contains ...    27   4.5  
At1g72270.1 68414.m08355 expressed protein                             27   5.9  

>At2g26440.1 68415.m03172 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 547

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 185 IIFGAGVYTGVYVAQNYQIEKVEDPKALFEKAQAFVKSKLSEVQDGKKD 331
           ++ GAGV   +   Q   ++   D K L     +F+K  +S++QDG  D
Sbjct: 87  LLSGAGVSNNLVEGQRGSLQ---DCKDLHHITSSFLKRSISKIQDGVND 132


>At1g72270.1 68414.m08355 expressed protein
          Length = 2777

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 215  VYVAQNYQIEKVEDPKALFEKAQAFVKSKLSEVQDGKKD 331
            VY +  Y ++   DP+ L       V+S LSEV DG KD
Sbjct: 1090 VYSSLKYILQTQVDPRPL----SCLVQSVLSEVVDGSKD 1124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,082,477
Number of Sequences: 28952
Number of extensions: 106865
Number of successful extensions: 187
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)