Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10g16
         (504 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0768 - 22988119-22988223,22988337-22988558,22988645-229888...    29   1.6  
06_03_0165 - 17399535-17400178,17400378-17400522                       29   2.8  
09_04_0276 - 16306894-16307526,16307556-16308572                       28   3.7  
09_04_0279 - 16349156-16349788,16352409-16353344                       27   8.6  

>12_02_0768 -
           22988119-22988223,22988337-22988558,22988645-22988810,
           22989176-22989181,22989281-22989453,22989737-22989928,
           22990034-22990211,22990302-22990444,22990666-22990755,
           22990869-22990991,22991391-22991568,22992213-22992442,
           22992557-22992616,22992731-22992798,22992908-22992953
          Length = 659

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/78 (24%), Positives = 38/78 (48%)
 Frame = +3

Query: 27  IPERHRELRSH*AEAHGNVREEPAPHKGRH*AREISLNHYFITVTRKCISLVSPYFNIDV 206
           +P   REL  + A A+ ++R+E A     H     +     +++ R  I+L    F+  V
Sbjct: 506 VPSVPRELEEYIATAYSSIRQEEAKSNAPH---SYTTIRTLLSILRISIALARLRFSETV 562

Query: 207 SQIDLRRPLQVLFLFLYN 260
           +Q D+   L+++ +  Y+
Sbjct: 563 AQSDVDEALRLMQMSKYS 580


>06_03_0165 - 17399535-17400178,17400378-17400522
          Length = 262

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 255 YNGNTAWAMATYSNPGFYSNPNDKSRLTPINSEWTP 362
           ++G   W   T    G YS   D +RLT I SE  P
Sbjct: 221 FSGEYRWCYPTPVREGIYSLATDANRLTTIFSEENP 256


>09_04_0276 - 16306894-16307526,16307556-16308572
          Length = 549

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 392 YTNYLY*IGLWRPLAVYWRKAR 327
           +T Y Y   LW P   YWR+AR
Sbjct: 111 HTTYNYTDILWSPYGAYWRQAR 132


>09_04_0279 - 16349156-16349788,16352409-16353344
          Length = 522

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 392 YTNYLY*IGLWRPLAVYWRKARLVV 318
           +T Y Y    W P   YWR+AR VV
Sbjct: 109 HTAYNYRDITWSPCDAYWRQARRVV 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,840,435
Number of Sequences: 37544
Number of extensions: 226203
Number of successful extensions: 436
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)