Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10g16
         (504 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23230.1 68414.m02906 expressed protein                             29   2.4  
At1g63600.1 68414.m07189 protein kinase-related low similarity t...    27   9.5  
At1g31910.1 68414.m03921 GHMP kinase family protein contains TIG...    27   9.5  

>At1g23230.1 68414.m02906 expressed protein
          Length = 1615

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 109 PLWGAGSSRTFPCASA*WDRSSRC-RSGICSFPSP 8
           PL+G   + + P  S  W+R+ RC R  I + PSP
Sbjct: 393 PLYGEDLAMSIPKGSLDWERAVRCIRHAIRTTPSP 427


>At1g63600.1 68414.m07189 protein kinase-related low similarity to
           receptor-like protein kinase 5 [Arabidopsis thaliana]
           GI:13506747; contains Pfam profile: PF01657 Domain of
           unknown function DUF26
          Length = 302

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -1

Query: 315 DLNKIRGCCTSPLPRQCCHCTKTKIKLVMDDANRSDLHQY*NTAILARY 169
           D++ +  C     PR C  C K  ++ +++  N+S   Q      L RY
Sbjct: 200 DIDSMAQCSPDLDPRNCTTCLKLAVQEMLECCNQSRWAQIFTPKCLLRY 248


>At1g31910.1 68414.m03921 GHMP kinase family protein contains
           TIGRFAM profile TIGR01219: phosphomevalonate kinase;
           contains Pfam PF00288: GHMP kinases putative ATP-binding
           protein domain; similar to Phosphomevalonate kinase (EC
           2.7.4.2) (Swiss-Prot:P24521) [Saccharomyces cerevisiae]
          Length = 505

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 203 CKSDRFASSITSFIFVFVQWQHCLGNGDV 289
           CK  +F  S    I +  Q  HCL  G V
Sbjct: 209 CKEGKFGCSDLDVIHMIAQTSHCLAQGKV 237


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,875,624
Number of Sequences: 28952
Number of extensions: 191217
Number of successful extensions: 435
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)