Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10g14
(630 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57808| Best HMM Match : WD40 (HMM E-Value=2.5e-22) 46 2e-05
SB_14232| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 31 1.0
SB_22641| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_12781| Best HMM Match : Spindle_assoc (HMM E-Value=0.12) 29 4.1
SB_23578| Best HMM Match : RPE65 (HMM E-Value=4.9e-17) 29 4.1
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2) 28 5.4
SB_22697| Best HMM Match : Hirudin (HMM E-Value=3.2) 28 5.4
SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59) 25 6.8
SB_45775| Best HMM Match : Extensin_2 (HMM E-Value=2.3) 27 9.5
SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_57808| Best HMM Match : WD40 (HMM E-Value=2.5e-22)
Length = 195
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +3
Query: 333 PQGPLNMTQDDFDGKRLRKSVMRKTVDYNAAIIKALE 443
P+ LN FDGKR+RK+V+RKT+DYN+ ++K LE
Sbjct: 33 PRTFLNRQPMVFDGKRMRKAVIRKTIDYNSCVVKFLE 69
>SB_14232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +3
Query: 375 KRLRKSVMRKTVDYNAAIIKALECRVWQRDW--RDRHALQPDAMYTPDLLPPPSYPDNPI 548
+R+ +M+ D N + +E RVW R+W R L PD + PP P P+
Sbjct: 11 RRMLLILMQLLDDDNPPV--TIERRVWTREWIKRREELLSPDIYFLQTFSDPPHPPPPPV 68
Query: 549 NA 554
+A
Sbjct: 69 SA 70
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -1
Query: 267 GPWVDPSYPCPAGAYPCSGEDVRNPC 190
G V SYPCP G Y SG+ V PC
Sbjct: 3569 GVEVTKSYPCPPGWYCESGDIVPRPC 3594
>SB_22641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +2
Query: 194 GFRTSSPEHGYAPAGHG 244
GFRT P GY PA HG
Sbjct: 110 GFRTPPPRTGYGPASHG 126
>SB_12781| Best HMM Match : Spindle_assoc (HMM E-Value=0.12)
Length = 200
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 345 LNMTQDDFDGKRLRKSVMRKTVDYNAAIIKALECRV 452
L T+ G R S ++KTV+ + I+ LECRV
Sbjct: 110 LENTKKALKGSEERVSSLQKTVEARESTIRTLECRV 145
>SB_23578| Best HMM Match : RPE65 (HMM E-Value=4.9e-17)
Length = 512
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 291 RHNFRPFNYQMRFPPQGPLNMTQDDFDGKRLRKSVMRK 404
R F FN M PP+ N T+D FDG ++ S+ K
Sbjct: 195 RGRFAKFNIYM-VPPKSKENTTEDPFDGAKVLCSIDAK 231
>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
Length = 1244
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 67 SVCLYT*QNPDNNFKVCIVLL 129
S CL+ QNP NN ++ I+LL
Sbjct: 789 SACLFKLQNPQNNLRLVILLL 809
>SB_22697| Best HMM Match : Hirudin (HMM E-Value=3.2)
Length = 306
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +2
Query: 89 KILTIISKCVLCCCEETIDNVIVYKSR*GIQVIKHGFRTSSPEHGYAPAGHGYDGSTHG 265
K L I+KC++ + + + + + G + HG+ S HGY HGY + HG
Sbjct: 166 KWLMGITKCLMGITKCLMGHAVPH----GYYEVAHGYHEVS--HGYYEVPHGYPAAPHG 218
>SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59)
Length = 218
Score = 25.4 bits (53), Expect(2) = 6.8
Identities = 7/33 (21%), Positives = 16/33 (48%)
Frame = +2
Query: 29 RFNEVIVCNEICFLFVYIHNKILTIISKCVLCC 127
R + C +C + ++ + + + +CV CC
Sbjct: 87 RVMRCVACRVMCCVACFVMHCVACCVMRCVACC 119
Score = 21.0 bits (42), Expect(2) = 6.8
Identities = 6/18 (33%), Positives = 10/18 (55%)
Frame = +2
Query: 104 ISKCVLCCCEETIDNVIV 157
+ +CV CC +D +V
Sbjct: 152 VMRCVACCVMRCVDCCVV 169
>SB_45775| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
Length = 584
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 173 GIQVIKHGFRTSSPEHGYAPAGHGYDGSTHG 265
G + HG+ + HGY HGY + HG
Sbjct: 426 GYHEVPHGYHEAP--HGYHEVPHGYPAAPHG 454
>SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2516
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 282 SAPVAGPWVDPSYPCPAGAYPCSGEDVRNPCFITWIPYLD 163
S + G W D Y AY C + ++ C + W+PY D
Sbjct: 229 SGSLGGFWND-DYCDTLRAYVCEKPNGQSLCPVNWVPYKD 267
>SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 662
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 345 LNMTQDDFDGKRLRKSVMRKTVDYNAAIIKALECRV 452
L T+ G R S + KTV+ + I+ LECRV
Sbjct: 281 LENTKKALKGSEERVSSLEKTVEARESRIRTLECRV 316
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,107,443
Number of Sequences: 59808
Number of extensions: 442013
Number of successful extensions: 1142
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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