Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10g14
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ...    99   3e-21
At3g14440.1 68416.m01830 9-cis-epoxycarotenoid dioxygenase, puta...    29   2.5  
At1g01130.1 68414.m00016 expressed protein ; expression supporte...    29   2.5  
At2g40475.1 68415.m04995 expressed protein                             29   3.4  
At1g11250.1 68414.m01288 syntaxin, putative (SYP125) similar to ...    29   3.4  
At1g61290.1 68414.m06908 syntaxin, putative (SYP124) similar to ...    28   4.4  

>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
           WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
           contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
          Length = 711

 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 42/98 (42%), Positives = 56/98 (57%)
 Frame = +3

Query: 333 PQGPLNMTQDDFDGKRLRKSVMRKTVDYNAAIIKALECRVWQRDWRDRHALQPDAMYTPD 512
           P GP +   D F  KR+RK   R+ VDY + +++ ++ R WQRD RDR  LQP      D
Sbjct: 36  PSGPFDPNVDSFGAKRMRKHTQRRAVDYTSTVVRYIQARTWQRDSRDRTTLQPTPAAAVD 95

Query: 513 LLPPPSYPDNPINAVTTRFVKTATNKMRCPIFAVAWTP 626
           +LP  +Y DNP  +   +FV  + NK RC I  V WTP
Sbjct: 96  MLPTVAYSDNPSTSFAAKFVHASLNKNRCSINRVLWTP 133


>At3g14440.1 68416.m01830 9-cis-epoxycarotenoid dioxygenase,
           putative / neoxanthin cleavage enzyme, putative /
           carotenoid cleavage dioxygenase, putative similar to
           9-cis-epoxycarotenoid dioxygenase GB:AAF26356
           [GI:6715257][Phaseolus vulgaris]
          Length = 599

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +3

Query: 315 YQMRFPPQGPLNMT-QDDFDGKRLRKSVMRKTVDYNAAIIKALECRVWQRDWRDRHALQP 491
           YQ++  P G L    + DFDG+     +    VD  +  + AL   V  + +       P
Sbjct: 268 YQVQITPNGDLKTVGRFDFDGQLESTMIAHPKVDPESGELFALSYDVVSKPYLKYFRFSP 327

Query: 492 DAMYTPDL 515
           D   +PD+
Sbjct: 328 DGTKSPDV 335


>At1g01130.1 68414.m00016 expressed protein ; expression supported
           by MPSS
          Length = 180

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 294 GECCSAPVAGPWVDPSYPCPAGAYPCSGEDVRN 196
           GE  +  V  PW+DPSY    G +   G   +N
Sbjct: 61  GEVAARRVLPPWMDPSYEWGGGKWKVDGRKNKN 93


>At2g40475.1 68415.m04995 expressed protein
          Length = 193

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
 Frame = +3

Query: 351 MTQDDFDGKRLRKSVMRKTVDYNAAII-----KALECRVWQ-RDWRDRHALQPDAMYTPD 512
           M++DD +G    K +++++   N++        A    +W+ R    +HAL  +++  P 
Sbjct: 4   MSEDDSNGVISSKIIVKESSQVNSSSRIYYYGGASVPFLWETRPGTPKHALFSESLRLPP 63

Query: 513 LLPPPSY 533
           L PPPSY
Sbjct: 64  LTPPPSY 70


>At1g11250.1 68414.m01288 syntaxin, putative (SYP125) similar to
           syntaxin-related protein At-SYR1 GB:AAD11809 GI:4206789
           from [Arabidopsis thaliana]
          Length = 298

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -1

Query: 570 QNVL*RHLLDYQDMKEEVKGQGCT*RPVEAHVYRASLFAKRG 445
           +N+L  H + + DM   V+ QG     +E+HV +AS F +RG
Sbjct: 213 KNLLELHQV-FLDMAALVEAQGQQLNNIESHVAKASSFVRRG 253


>At1g61290.1 68414.m06908 syntaxin, putative (SYP124) similar to
           syntaxin-related protein Nt-syr1 GI:4206787 from
           [Nicotiana tabacum]
          Length = 303

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 540 YQDMKEEVKGQGCT*RPVEAHVYRASLFAKRG 445
           + DM   V+ QG     +E+HV +AS F +RG
Sbjct: 227 FLDMAALVESQGQQLNDIESHVSKASSFVRRG 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,792,925
Number of Sequences: 28952
Number of extensions: 287675
Number of successful extensions: 774
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)