Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10g13
(732 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g71240.1 68414.m08222 expressed protein contains Pfam profile... 31 1.0
At5g25540.1 68418.m03039 expressed protein 29 3.2
At1g17600.1 68414.m02173 disease resistance protein (TIR-NBS-LRR... 29 3.2
At5g59200.1 68418.m07419 pentatricopeptide (PPR) repeat-containi... 28 5.6
At4g28650.1 68417.m04095 leucine-rich repeat transmembrane prote... 28 5.6
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 28 5.6
At5g11440.1 68418.m01336 hypothetical protein 28 7.3
At3g57940.1 68416.m06458 expressed protein contains Pfam profile... 28 7.3
At5g59150.1 68418.m07413 Ras-related GTP-binding protein, putati... 27 9.7
At3g46830.1 68416.m05083 Ras-related protein (RAB11A) / small GT... 27 9.7
At1g80840.1 68414.m09484 WRKY family transcription factor simila... 27 9.7
At1g67220.1 68414.m07651 zinc finger protein-related similar to ... 27 9.7
>At1g71240.1 68414.m08222 expressed protein contains Pfam profile:
PF04842 plant protein of unknown function (DUF639)
Length = 824
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +2
Query: 467 VLGDLDIP-KVKKQSLQHLKSSVEEDFQFLSELAAL-KAVTEKVESGAISADNIIDF--Y 634
+L D+ P K K QSL+ + ++DF+ L EL + + V G +S D II +
Sbjct: 81 ILSDVTSPLKKKSQSLKKIDLEDQQDFEDLEELLTVEQTVRSDTPKGFLSFDAIISIEQF 140
Query: 635 NLRINSL 655
+ R+N +
Sbjct: 141 SSRMNGI 147
>At5g25540.1 68418.m03039 expressed protein
Length = 175
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 224 LLITDPFNTPEAVVEVYISGISSLGSSADFKSKK--YPLVVDEYEPDTFDV 370
LL T P + E++ +VY++ L ++ + ++ Y +EY PDT D+
Sbjct: 91 LLATYPGLSQESINDVYLANTCDLDATIEMLNQLEIYSTEAEEYLPDTLDI 141
>At1g17600.1 68414.m02173 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1025
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = -1
Query: 708 LASLVCNELGPWKSRSACKELIRKL*KSMILSALIAPDSTFSVTAFKAASSLRNW 544
L+S++C+++ W + C+E+ ++L + L D V A + +NW
Sbjct: 261 LSSILCDDIRLWSVEAGCQEIKKRLGNQKVFLVL---DGVDKVAQVHALAKEKNW 312
>At5g59200.1 68418.m07419 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 590
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +2
Query: 170 IFSASLGLSVEENSEWNGLLITDPFNTPEAVVE-VYISGISSL-GSSADFK 316
IF LGL ++ + W GL+IT+ N E+ +E IS ++++ G + F+
Sbjct: 12 IFINELGLLLQAHFTWIGLIITENCNGLESSIEREMISSLAAITGGPSTFR 62
>At4g28650.1 68417.m04095 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase 5,
Arabidopsis thaliana, PIR1:S27756
Length = 1013
Score = 28.3 bits (60), Expect = 5.6
Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 2/185 (1%)
Frame = +2
Query: 68 IIGINASGELS--ILHSPESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDP 241
+ G+N +G++S I +SF+ S FESLL + + + +NS L +
Sbjct: 78 LAGMNLTGKISDSISQLSSLVSFNISCNGFESLLPKSIPPLKSIDISQNSFSGSLFLFS- 136
Query: 242 FNTPEAVVEVYISGISSLGSSADFKSKKYPLVVDEYEPDTFDVLKHRINQRFTNGGNKLV 421
N +V + SG + G+ + L V + + F + + F N KL
Sbjct: 137 -NESLGLVHLNASGNNLSGNLTEDLGNLVSLEVLDLRGNFF---QGSLPSSFKN-LQKLR 191
Query: 422 NINLSDSDQLLSYSNVLGDLDIPKVKKQSLQHLKSSVEEDFQFLSELAALKAVTEKVESG 601
+ LS ++ +VLG L + K + +F ++ L L K+ SG
Sbjct: 192 FLGLSGNNLTGELPSVLGQLPSLETAILGYNEFKGPIPPEFGNINSLKYLDLAIGKL-SG 250
Query: 602 AISAD 616
I ++
Sbjct: 251 EIPSE 255
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +2
Query: 152 ESLLKEIFSASLGLSVEENSEWNGLLITDPFNTPEAVVE 268
E LL+ + LG EE +E N +L TDP TP+A+ E
Sbjct: 70 EDLLRYVVYTGLGW--EEGNEGN-ILFTDPLCTPKAIRE 105
>At5g11440.1 68418.m01336 hypothetical protein
Length = 155
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +2
Query: 119 SLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDPFNTPEAVVEVYISGISSLG 298
++ S K+ E K+I L L ++ + + LL+T + E++ +VY++ L
Sbjct: 39 TVEVSMPKKSSEMAYKQIRDDDLDLEMDIDMDIEYLLVTFSGLSQESITDVYLANGGDLE 98
Query: 299 SSADFKSKK--YPLVVDEYEPDTFDV 370
++ + ++ Y +E P+T D+
Sbjct: 99 ATIEMLNQLEIYSTESEENLPETLDI 124
>At3g57940.1 68416.m06458 expressed protein contains Pfam profile
PF05127: Putative ATPase (DUF699)
Length = 1024
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 74 GINASGELSILHSPESLSFSGSSKTFESL-LKEIFSASLGLSVEENSEWNGLLITD 238
G+ S ++++HSP+SL F + F+ + L E G +E S NGLL D
Sbjct: 440 GLEGSVLVNVIHSPDSLKFLRTGCLFKKIELTESIRYGSGDPIE--SWLNGLLCLD 493
>At5g59150.1 68418.m07413 Ras-related GTP-binding protein, putative
similar to Ras-related protein Rab11C SP:Q40193 from
[Lotus japonicus]
Length = 217
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 500 KQSLQHLKSSVEEDFQFLSELAALKAVTEKVESGAISADNI 622
K L HL+S EED Q L+E L +E+ A+ A N+
Sbjct: 126 KADLNHLRSVAEEDGQTLAETEGLSF----LETSALEATNV 162
>At3g46830.1 68416.m05083 Ras-related protein (RAB11A) / small
GTP-binding protein, putative identical to SP|Q96283
Ras-related protein Rab11A {Arabidopsis thaliana};
identical to cDNA Rab11 protein GI:2598228
Length = 217
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 500 KQSLQHLKSSVEEDFQFLSELAALKAVTEKVESGAISADNI 622
K L HL+S EED Q L+E L +E+ A+ A N+
Sbjct: 126 KSDLNHLRSVAEEDGQSLAEKEGLSF----LETSALEATNV 162
>At1g80840.1 68414.m09484 WRKY family transcription factor similar
to WRKY transcription factor GB:BAA87058 GI:6472585 from
[Nicotiana tabacum]
Length = 302
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 479 LDIPKVKKQSLQHLKSSVEEDFQFLSELAALKAVTEKV 592
+D P+V+K ++ + SS+ +D F + LAA AVT K+
Sbjct: 259 IDFPQVQKLLVEQMASSLTKDPNFTAALAA--AVTGKL 294
>At1g67220.1 68414.m07651 zinc finger protein-related similar to
SP|Q09472 E1A-associated protein p300 {Homo sapiens},
SP|Q92793 CREB-binding protein {Homo sapiens}; contains
Pfam profiles PF00569: Zinc finger ZZ type, PF00628:
PHD-finger, PF02135: TAZ zinc finger
Length = 1357
Score = 27.5 bits (58), Expect = 9.7
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = -1
Query: 267 STTASGVLNGSVINNPFHSEFSSTERPR--EAENISFKRLSKVLLEPEKLNDSGLWRMLS 94
+T + N + N P S +S E + E+ KR K EP KLN W +L
Sbjct: 17 NTESFDEFNQRLNNLPAESNVTSDEDAQFLESRKCQSKRWRKE--EPLKLNLRSPWNVLC 74
Query: 93 SPEALIPIIEEIKKT 49
SPE++ ++KT
Sbjct: 75 SPESISSAKFIVEKT 89
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,725,855
Number of Sequences: 28952
Number of extensions: 293017
Number of successful extensions: 994
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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