Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10g10
(693 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g10920.1 68416.m01317 superoxide dismutase [Mn], mitochondria... 229 1e-60
At3g56350.1 68416.m06266 superoxide dismutase [Mn], putative / m... 213 1e-55
At5g23310.1 68418.m02727 superoxide dismutase [Fe] / iron supero... 122 2e-28
At5g51100.1 68418.m06335 superoxide dismutase [Fe], putative / i... 121 5e-28
At4g25100.3 68417.m03608 superoxide dismutase [Fe], chloroplast ... 120 1e-27
At4g25100.2 68417.m03607 superoxide dismutase [Fe], chloroplast ... 120 1e-27
At4g25100.1 68417.m03606 superoxide dismutase [Fe], chloroplast ... 120 1e-27
At1g11170.2 68414.m01279 expressed protein contains Pfam profile... 30 1.7
At1g11170.1 68414.m01280 expressed protein contains Pfam profile... 30 1.7
At1g61240.2 68414.m06901 expressed protein contains Pfam profile... 29 2.2
At1g61240.1 68414.m06900 expressed protein contains Pfam profile... 29 2.2
At1g72300.1 68414.m08358 leucine-rich repeat transmembrane prote... 29 2.9
At3g11390.1 68416.m01387 DC1 domain-containing protein contains ... 29 3.9
At1g11620.1 68414.m01334 F-box family protein contains F-box dom... 29 3.9
At1g08040.1 68414.m00878 expressed protein contains Pfam profile... 29 3.9
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 28 5.1
At2g37890.1 68415.m04651 mitochondrial substrate carrier family ... 28 5.1
At1g32950.1 68414.m04058 subtilase family protein contains simil... 28 5.1
At1g08210.1 68414.m00907 aspartyl protease family protein contai... 28 5.1
At2g32230.1 68415.m03938 pentatricopeptide (PPR) repeat-containi... 28 6.8
At4g05530.1 68417.m00842 short-chain dehydrogenase/reductase (SD... 27 8.9
At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal hydrolase-r... 27 8.9
>At3g10920.1 68416.m01317 superoxide dismutase [Mn], mitochondrial
(SODA) / manganese superoxide dismutase (MSD1) identical
to manganese superoxide dismutase [Arabidopsis thaliana]
gi|3273751|gb|AAC24832
Length = 231
Score = 229 bits (561), Expect = 1e-60
Identities = 110/197 (55%), Positives = 137/197 (69%), Gaps = 5/197 (2%)
Frame = +3
Query: 117 LIRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQA 296
L+R+ G Q TLP+LPY+Y ALEP IS EIM +HH KHH Y+ N N A E+L QA
Sbjct: 22 LLRIRGI--QTFTLPDLPYDYGALEPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVN 79
Query: 297 KGDIDTIINLAPALKFNGGGHINHSIFWHNLSPN---GGK-PSDVLTKAVEKDFGSWDNL 464
KGD T++ L A+KFNGGGH+NHSIFW NL+P+ GG+ P L A++ FGS + L
Sbjct: 80 KGDASTVVKLQSAIKFNGGGHVNHSIFWKNLAPSSEGGGEPPKGSLGSAIDAHFGSLEGL 139
Query: 465 KNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTG-LVPLFGIDVWEHAYY 641
++S AVQGSGW WLG +K++KKL + T NQDPL G LVPL GIDVWEHAYY
Sbjct: 140 VKKMSAEGAAVQGSGWVWLGLDKELKKLVVDTTANQDPLVTKGGSLVPLVGIDVWEHAYY 199
Query: 642 LQYKNVRADYVKAIFDV 692
LQYKNVR +Y+K ++ V
Sbjct: 200 LQYKNVRPEYLKNVWKV 216
>At3g56350.1 68416.m06266 superoxide dismutase [Mn], putative /
manganese superoxide dismutase, putative similar to
manganese superoxide dismutase (MSD1) [Arabidopsis
thaliana] gi|3273751|gb|AAC24832
Length = 241
Score = 213 bits (519), Expect = 1e-55
Identities = 101/191 (52%), Positives = 128/191 (67%), Gaps = 6/191 (3%)
Frame = +3
Query: 138 SRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTI 317
S + +LP+LPY Y+ALEP IS EIM LHH KHH TY+ N A L A A GD ++
Sbjct: 32 SMKTASLPDLPYAYDALEPAISEEIMRLHHQKHHQTYVTQYNKALNSLRSAMADGDHSSV 91
Query: 318 INLAPALKFNGGGHINHSIFWHNLSP---NGGK-PSDVLTKAVEKDFGSWDNLKNQLSTA 485
+ L +KFNGGGH+NH+IFW NL+P GGK P D L A++ FGS + L +++
Sbjct: 92 VKLQSLIKFNGGGHVNHAIFWKNLAPVHEGGGKPPHDPLASAIDAHFGSLEGLIQKMNAE 151
Query: 486 SVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTG--LVPLFGIDVWEHAYYLQYKNV 659
AVQGSGW W G ++++K+L + T NQDPL T G LVPL GIDVWEHAYY QYKN
Sbjct: 152 GAAVQGSGWVWFGLDRELKRLVVETTANQDPL-VTKGSHLVPLIGIDVWEHAYYPQYKNA 210
Query: 660 RADYVKAIFDV 692
RA+Y+K I+ V
Sbjct: 211 RAEYLKNIWTV 221
>At5g23310.1 68418.m02727 superoxide dismutase [Fe] / iron
superoxide dismutase 3 (FSD3) identical to iron
superoxide dismutase 3 [Arabidopsis thaliana]
gi|3273757|gb|AAC24834
Length = 263
Score = 122 bits (295), Expect = 2e-28
Identities = 62/181 (34%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Frame = +3
Query: 168 PYEYNALEPVISREIMSLHHSKHHATYINNLNVA---EEKLAQAQAKGDIDTIINLA-PA 335
PY +ALEP +SR + +H KHH Y++NLN +++L + I N P
Sbjct: 56 PYPLDALEPYMSRRTLEVHWGKHHRGYVDNLNKQLGKDDRLYGYTMEELIKATYNNGNPL 115
Query: 336 LKFNGGGHI-NHSIFWHNLSPNGGK-PSDVLTKAVEKDFGSWDNLKNQLSTASVAVQGSG 509
+FN + NH FW ++ P GG P + + ++KDFGS+ N + + + A++ GSG
Sbjct: 116 PEFNNAAQVYNHDFFWESMQPGGGDTPQKGVLEQIDKDFGSFTNFREKFTNAALTQFGSG 175
Query: 510 WGWLGYNKQMKKLQIATCQNQ-DPLQATTGLVPLFGIDVWEHAYYLQYKNVRADYVKAIF 686
W WL ++ ++L++ N +PL +P+ +DVWEH+YYL YKN RA Y+
Sbjct: 176 WVWLVLKREERRLEVVKTSNAINPL--VWDDIPIICVDVWEHSYYLDYKNDRAKYINTFL 233
Query: 687 D 689
+
Sbjct: 234 N 234
>At5g51100.1 68418.m06335 superoxide dismutase [Fe], putative / iron
superoxide dismutase, putative similar to Fe-superoxide
dismutase precursor [Medicago sativa]
gi|16974682|gb|AAL32441
Length = 305
Score = 121 bits (291), Expect = 5e-28
Identities = 72/220 (32%), Positives = 109/220 (49%), Gaps = 24/220 (10%)
Frame = +3
Query: 102 QRIGSLIRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKL 281
+R+G+ + V+G L PY +ALEP +SRE + H KHH TY+ NLN ++ L
Sbjct: 37 RRLGTKVAVSGVITAGFELKPPPYPLDALEPHMSRETLDYHWGKHHKTYVENLN--KQIL 94
Query: 282 AQAQAKGDIDTII-------NLAPALKFNGGGHINHSIFWHNLSP-NGGKPSDVLTKAVE 437
++ ++ N+ PA N NH FW ++ P GGKP+ L + +E
Sbjct: 95 GTDLDALSLEEVVLLSYNKGNMLPAFN-NAAQAWNHEFFWESIQPGGGGKPTGELLRLIE 153
Query: 438 KDFGSWDNLKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTGLV----- 602
+DFGS++ + +A+ + GSGW WL Y + +L +A N P + LV
Sbjct: 154 RDFGSFEEFLERFKSAAASNFGSGWTWLAY--KANRLDVANAVNPLPKEEDKKLVIVKTP 211
Query: 603 -----------PLFGIDVWEHAYYLQYKNVRADYVKAIFD 689
PL ID WEHAYYL ++N RA+Y+ +
Sbjct: 212 NAVNPLVWDYSPLLTIDTWEHAYYLDFENRRAEYINTFME 251
>At4g25100.3 68417.m03608 superoxide dismutase [Fe], chloroplast
(SODB) / iron superoxide dismutase (FSD1) identical to
Fe-superoxide dismutase [Arabidopsis thaliana]
gi|166700|gb|AAA32791; supported by cDNA, Ceres:32935
Length = 212
Score = 120 bits (288), Expect = 1e-27
Identities = 66/188 (35%), Positives = 97/188 (51%), Gaps = 5/188 (2%)
Frame = +3
Query: 129 AGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLN--VAEEKLAQAQAKG 302
+ A + L P+ +ALEP +S++ + H KHH Y++NL V +L +
Sbjct: 4 SSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEH 63
Query: 303 DIDTIINLAPALK-FNGGGHI-NHSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNLKNQ 473
I + N L FN NH FW ++ P GG KPS L +E+DF S++ +
Sbjct: 64 IIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEE 123
Query: 474 LSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTGLVPLFGIDVWEHAYYLQYK 653
+ A+ G+GW WL Y+ + K+ + T +PL G PL IDVWEHAYYL ++
Sbjct: 124 FNAAAATQFGAGWAWLAYSNEKLKV-VKTPNAVNPL--VLGSFPLLTIDVWEHAYYLDFQ 180
Query: 654 NVRADYVK 677
N R DY+K
Sbjct: 181 NRRPDYIK 188
>At4g25100.2 68417.m03607 superoxide dismutase [Fe], chloroplast
(SODB) / iron superoxide dismutase (FSD1) identical to
Fe-superoxide dismutase [Arabidopsis thaliana]
gi|166700|gb|AAA32791; supported by cDNA, Ceres:32935
Length = 212
Score = 120 bits (288), Expect = 1e-27
Identities = 66/188 (35%), Positives = 97/188 (51%), Gaps = 5/188 (2%)
Frame = +3
Query: 129 AGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLN--VAEEKLAQAQAKG 302
+ A + L P+ +ALEP +S++ + H KHH Y++NL V +L +
Sbjct: 4 SSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEH 63
Query: 303 DIDTIINLAPALK-FNGGGHI-NHSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNLKNQ 473
I + N L FN NH FW ++ P GG KPS L +E+DF S++ +
Sbjct: 64 IIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEE 123
Query: 474 LSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTGLVPLFGIDVWEHAYYLQYK 653
+ A+ G+GW WL Y+ + K+ + T +PL G PL IDVWEHAYYL ++
Sbjct: 124 FNAAAATQFGAGWAWLAYSNEKLKV-VKTPNAVNPL--VLGSFPLLTIDVWEHAYYLDFQ 180
Query: 654 NVRADYVK 677
N R DY+K
Sbjct: 181 NRRPDYIK 188
>At4g25100.1 68417.m03606 superoxide dismutase [Fe], chloroplast
(SODB) / iron superoxide dismutase (FSD1) identical to
Fe-superoxide dismutase [Arabidopsis thaliana]
gi|166700|gb|AAA32791; supported by cDNA, Ceres:32935
Length = 212
Score = 120 bits (288), Expect = 1e-27
Identities = 66/188 (35%), Positives = 97/188 (51%), Gaps = 5/188 (2%)
Frame = +3
Query: 129 AGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLN--VAEEKLAQAQAKG 302
+ A + L P+ +ALEP +S++ + H KHH Y++NL V +L +
Sbjct: 4 SSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEH 63
Query: 303 DIDTIINLAPALK-FNGGGHI-NHSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNLKNQ 473
I + N L FN NH FW ++ P GG KPS L +E+DF S++ +
Sbjct: 64 IIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEE 123
Query: 474 LSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTGLVPLFGIDVWEHAYYLQYK 653
+ A+ G+GW WL Y+ + K+ + T +PL G PL IDVWEHAYYL ++
Sbjct: 124 FNAAAATQFGAGWAWLAYSNEKLKV-VKTPNAVNPL--VLGSFPLLTIDVWEHAYYLDFQ 180
Query: 654 NVRADYVK 677
N R DY+K
Sbjct: 181 NRRPDYIK 188
>At1g11170.2 68414.m01279 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 335
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = +2
Query: 344 QWW---WSHQPLDLLAQPVTKWWQA 409
+WW WS + + ++AQ TKWW A
Sbjct: 157 KWWDLEWSSKSIHIVAQNQTKWWFA 181
>At1g11170.1 68414.m01280 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 438
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = +2
Query: 344 QWW---WSHQPLDLLAQPVTKWWQA 409
+WW WS + + ++AQ TKWW A
Sbjct: 157 KWWDLEWSSKSIHIVAQNQTKWWFA 181
>At1g61240.2 68414.m06901 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 425
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Frame = +2
Query: 344 QWW---WSHQPLDLLAQPVTKWWQA 409
QWW WS + + ++A TKWW A
Sbjct: 154 QWWDLEWSSKAIHIVAHNQTKWWFA 178
>At1g61240.1 68414.m06900 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 425
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Frame = +2
Query: 344 QWW---WSHQPLDLLAQPVTKWWQA 409
QWW WS + + ++A TKWW A
Sbjct: 154 QWWDLEWSSKAIHIVAHNQTKWWFA 178
>At1g72300.1 68414.m08358 leucine-rich repeat transmembrane protein
kinase, putative similar to GI:3641252 from [Malus x
domestica] (Plant Mol. Biol. 40 (6), 945-957 (1999))
Length = 1095
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Frame = -1
Query: 678 LSRSRHERS------CTEDSTRAPIHRFRRAGPIQWWPAEDP 571
LSR++HE C DS R I+ F G + +W E+P
Sbjct: 851 LSRAKHENLVALQGYCVHDSARILIYSFMENGSLDYWLHENP 892
>At3g11390.1 68416.m01387 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 710
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 580 RGSWFWHVAICNFFICLL*PSQPQP 506
+G+WF+H ICNF + L Q P
Sbjct: 241 QGNWFYHCPICNFCLDLSCSQQSVP 265
>At1g11620.1 68414.m01334 F-box family protein contains F-box domain
Pfam:PF00646
Length = 363
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 411 SDVLTKAVEKDFGSWDNLKNQLSTASVAVQGSGWGWLGYNKQMKKL 548
SD V+ +FG +D L +SV ++G+ + WLGYNK +L
Sbjct: 181 SDSWKVVVDTNFGGFDGLP----LSSVCLRGTPY-WLGYNKSGNEL 221
>At1g08040.1 68414.m00878 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 382
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 314 HYQPCTSLEIQWWWSHQPLDLLAQPVTKWWQA 409
HY T+ Q+ WS + + A+ TKWW A
Sbjct: 155 HYDGRTTEWDQFEWSKNAIHISAKKQTKWWYA 186
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = +3
Query: 132 GASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDID 311
G ++H E ++ EPV+ +E + H K A+ + N N + Q +K D +
Sbjct: 27 GGQEKEHVPVEKSFDSEEREPVVLKEEKPVKHEK-EASILGNKNQMDTGDVQEVSKNDFE 85
Query: 312 TIIN 323
++
Sbjct: 86 ATLD 89
>At2g37890.1 68415.m04651 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 337
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 297 KGDIDTIINLAPALKFNGGGHINHSIFWHNLSPN 398
KG T++ + P+L N + + +FWH+ PN
Sbjct: 206 KGLGATLLGVGPSLAINFAAYESMKLFWHSHRPN 239
>At1g32950.1 68414.m04058 subtilase family protein contains
similarity to SBT1 GI:1771160 from [Lycopersicon
esculentum]
Length = 773
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -3
Query: 448 PKSFSTALVRTSEGLPPFGDRLCQKIEWLM*PPPLNFKAG 329
P +F +A+V T+ PFG+++ + L P P ++ G
Sbjct: 573 PAAFRSAIVTTAWRTDPFGEQIAAESSSLKVPDPFDYGGG 612
>At1g08210.1 68414.m00907 aspartyl protease family protein contains
Pfam profile PF00026: Eukaryotic aspartyl protease;
similar to CND41, chloroplast nucleoid DNA binding
protein (GI:2541876) {Nicotiana tabacum}
Length = 492
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 452 GSKVFLNGFGENIRRLATIW*QVVPKDRVVDVTTTIEFQGWCKVDNGVDITFS 294
GS ++ GF R TI +V KD+VV + GW + D +++ S
Sbjct: 395 GSSIWCIGFQRMSHRRITILGDLVLKDKVVVYDLVRQRIGWAEYDCSLEVNVS 447
>At2g32230.1 68415.m03938 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 572
Score = 27.9 bits (59), Expect = 6.8
Identities = 32/107 (29%), Positives = 47/107 (43%)
Frame = +3
Query: 30 VHLVNSKVDRFPFY*TSLVIMLMSQRIGSLIRVAGASRQKHTLPELPYEYNALEPVISRE 209
VHL + + F FY TSL++ R LI V SR TLP + +A P E
Sbjct: 28 VHLHHPRFSPFRFYHTSLLV--KGTRDRRLILVE-RSRHLCTLPLAAAKQSAASP---SE 81
Query: 210 IMSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTIINLAPALKFNG 350
+S +K A + + ++KL KGD+ + L + NG
Sbjct: 82 NLS-RKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG 127
>At4g05530.1 68417.m00842 short-chain dehydrogenase/reductase (SDR)
family protein similar to peroxisomal short-chain
alcohol dehydrogenase GI:4105190 from [Homo sapiens]
Length = 254
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 546 ISSFVCCSQANPSLSPVLPQKLSTVDSL 463
I VC + ANPS P+L K + +D L
Sbjct: 89 IDIVVCNAAANPSTDPILSSKEAVLDKL 116
>At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1136
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +3
Query: 78 SLVIMLMSQRIGSLIRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINN 257
S ++++ + RI L +A S Y ++P + EIM++ +
Sbjct: 651 SKILLIENSRISLLNNLARLS----AFDNRTYILQLMKPFLLNEIMNMERKAKADAVAAD 706
Query: 258 LNVAEEKLAQAQAKGD 305
L + EEK AQ++ K D
Sbjct: 707 LALEEEKKAQSKKKND 722
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,665,028
Number of Sequences: 28952
Number of extensions: 351715
Number of successful extensions: 1053
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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