Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10g08
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-16|CAB63338.2|  156|Caenorhabditis elegans Hypothetical...   107   8e-24
Z82282-4|CAB05276.1|  485|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z82282-2|CAB05274.2|  544|Caenorhabditis elegans Hypothetical pr...    29   4.3  

>AL032631-16|CAB63338.2|  156|Caenorhabditis elegans Hypothetical
           protein Y106G6H.8 protein.
          Length = 156

 Score =  107 bits (257), Expect = 8e-24
 Identities = 44/112 (39%), Positives = 69/112 (61%)
 Frame = +2

Query: 212 EAGPFVRLAGLSGAAAVILGAMGAHRTFPETEAKDDLKKIFETANRFHFLHTLALVTVPL 391
           +  P +RLAGLSGA A+ LGA G+H         +  +  F+TA+R+H +H+LAL+  P 
Sbjct: 44  DMSPIIRLAGLSGAVAISLGAYGSHVLRDNPSIDERRRTAFDTASRYHLIHSLALLASPA 103

Query: 392 CRRPYIAGAFFIAGMGMFCGTCYYHAFTGDRKLRQVTPLGGTCLILGWIAMV 547
            R P +    F AG+ +FCG CY+++ +G    R+ TP+GG  LI+ W++ +
Sbjct: 104 ARFPLVTAGLFTAGITLFCGPCYHYSISGVETTRKYTPIGGVTLIIAWLSFI 155


>Z82282-4|CAB05276.1|  485|Caenorhabditis elegans Hypothetical
           protein T07G12.4 protein.
          Length = 485

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 407 IAGAFFIAGMGMFCGTCYYHAFTGDRKLRQVTPLGGTCLILG 532
           I G    AGM M CG  + +  + D +L +   + G  +ILG
Sbjct: 327 IIGGVLTAGMSMICGVAFSNLQSVDLRLSRNLTIIGLSIILG 368


>Z82282-2|CAB05274.2|  544|Caenorhabditis elegans Hypothetical
           protein T07G12.2 protein.
          Length = 544

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 407 IAGAFFIAGMGMFCGTCYYHAFTGDRKLRQVTPLGGTCLILG 532
           I G    AGM M CG  + +  + D +L +   + G  +ILG
Sbjct: 389 IIGGVLTAGMSMICGVAFSNLQSVDLRLSRNLTIIGLSIILG 430


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,378,274
Number of Sequences: 27780
Number of extensions: 266699
Number of successful extensions: 511
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)