Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10g06
         (318 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82256-2|CAB05115.1|   62|Caenorhabditis elegans Hypothetical pr...    75   8e-15
AL032657-13|CAB76744.1|   87|Caenorhabditis elegans Hypothetical...    57   3e-09
AL032625-6|CAN86641.1|  167|Caenorhabditis elegans Hypothetical ...    44   2e-05
Z50029-8|CAA90342.2|  668|Caenorhabditis elegans Hypothetical pr...    27   2.9  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    27   2.9  
AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical ...    27   2.9  
AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical ...    27   2.9  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    27   2.9  
U23183-3|AAA64340.3|  496|Caenorhabditis elegans Hypothetical pr...    26   6.8  
AC006712-8|AAU20838.1|  450|Caenorhabditis elegans Hypothetical ...    26   6.8  
Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical p...    25   8.9  
Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical p...    25   8.9  
Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical p...    25   8.9  
Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical p...    25   8.9  
Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical p...    25   8.9  
Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical pr...    25   8.9  
Z68108-8|CAF31488.1| 1509|Caenorhabditis elegans Hypothetical pr...    25   8.9  
Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical pr...    25   8.9  
AY389810-1|AAR28682.1|  781|Caenorhabditis elegans zinc finger t...    25   8.9  
AY389809-1|AAR28681.1|  909|Caenorhabditis elegans zinc finger t...    25   8.9  
AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical...    25   8.9  

>Z82256-2|CAB05115.1|   62|Caenorhabditis elegans Hypothetical
           protein B0513.3 protein.
          Length = 62

 Score = 75.4 bits (177), Expect = 8e-15
 Identities = 33/50 (66%), Positives = 39/50 (78%)
 Frame = +2

Query: 53  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGN 202
           MAKSKNHTNHNQN+KAHRNGI KP+K    S  G+D KF++N RF +K N
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGITKPKKHIFLSMKGVDAKFIKNLRFSRKNN 50


>AL032657-13|CAB76744.1|   87|Caenorhabditis elegans Hypothetical
           protein Y47H9C.14 protein.
          Length = 87

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 25/48 (52%), Positives = 33/48 (68%)
 Frame = +2

Query: 59  KSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGN 202
           K +NHTNHN+N KAHRNGI KP+K    S  G   +F+++ RF +K N
Sbjct: 14  KPENHTNHNRNNKAHRNGITKPKKHIFLSIEGSRRQFIKSLRFFRKNN 61


>AL032625-6|CAN86641.1|  167|Caenorhabditis elegans Hypothetical
           protein Y37H9A.5 protein.
          Length = 167

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 18/23 (78%), Positives = 19/23 (82%)
 Frame = +2

Query: 59  KSKNHTNHNQNRKAHRNGIKKPR 127
           KSKNHTNHNQN  AHR GI KP+
Sbjct: 80  KSKNHTNHNQNNTAHRIGITKPK 102


>Z50029-8|CAA90342.2|  668|Caenorhabditis elegans Hypothetical
           protein ZC504.3 protein.
          Length = 668

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 92  RKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCK 193
           +K HR+ +KK R+ RH   +   P +    R C+
Sbjct: 266 QKLHRDAMKKRREQRHREAVSKLPVYYPGLRGCQ 299


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 113  YHFCELCGFGYDLYDSL 63
            Y+FC++CGFG    DS+
Sbjct: 1685 YYFCKVCGFGSTSADSV 1701


>AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical
           protein Y47D3B.5b protein.
          Length = 1136

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +3

Query: 9   SVLSSDSKWIEN--SSKWQSQRIIQIITKTAKLTE 107
           ++LS   KW+ +  S KWQ  RI   IT+ AK+T+
Sbjct: 272 AILSKCGKWMTDSLSEKWQQHRI--QITEKAKMTK 304


>AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical
           protein Y47D3B.5a protein.
          Length = 1088

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +3

Query: 9   SVLSSDSKWIEN--SSKWQSQRIIQIITKTAKLTE 107
           ++LS   KW+ +  S KWQ  RI   IT+ AK+T+
Sbjct: 272 AILSKCGKWMTDSLSEKWQQHRI--QITEKAKMTK 304


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 113  YHFCELCGFGYDLYDSL 63
            Y+FC++CGFG    DS+
Sbjct: 1685 YYFCKVCGFGSTSADSV 1701


>U23183-3|AAA64340.3|  496|Caenorhabditis elegans Hypothetical
           protein K01A12.3 protein.
          Length = 496

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 71  HTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRN 178
           H  HN +++++  G+K  R +        D  F+RN
Sbjct: 373 HGRHNVSKRSNAAGMKSTRISARSGRTNRDGNFVRN 408


>AC006712-8|AAU20838.1|  450|Caenorhabditis elegans Hypothetical
           protein Y119C1B.3 protein.
          Length = 450

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +2

Query: 59  KSKNHTNHNQNRKAHRNGIKKPRKTRHES--TLGMDPKFLRNQR 184
           KSK     N    +  NG + P+KTR  S  T    PK  R+ R
Sbjct: 377 KSKKAAAANHKNASRNNGNETPKKTRRSSSTTPTRTPKQRRSSR 420


>Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical
           protein T05A10.1a protein.
          Length = 2066

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/38 (26%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +3

Query: 15  LSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQ 125
           + S+ +++EN+ ++Q++ IIQ +     ++TEM+ + +
Sbjct: 657 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 694


>Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical
           protein T05A10.1f protein.
          Length = 2048

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/38 (26%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +3

Query: 15  LSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQ 125
           + S+ +++EN+ ++Q++ IIQ +     ++TEM+ + +
Sbjct: 725 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 762


>Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical
           protein T05A10.1e protein.
          Length = 2101

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/38 (26%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +3

Query: 15  LSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQ 125
           + S+ +++EN+ ++Q++ IIQ +     ++TEM+ + +
Sbjct: 725 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 762


>Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical
           protein T05A10.1d protein.
          Length = 2134

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/38 (26%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +3

Query: 15  LSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQ 125
           + S+ +++EN+ ++Q++ IIQ +     ++TEM+ + +
Sbjct: 725 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 762


>Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical
           protein T05A10.1g protein.
          Length = 1888

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/38 (26%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +3

Query: 15  LSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQ 125
           + S+ +++EN+ ++Q++ IIQ +     ++TEM+ + +
Sbjct: 725 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 762


>Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical
           protein T05A10.1i protein.
          Length = 1927

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/38 (26%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +3

Query: 15  LSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQ 125
           + S+ +++EN+ ++Q++ IIQ +     ++TEM+ + +
Sbjct: 725 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 762


>Z68108-8|CAF31488.1| 1509|Caenorhabditis elegans Hypothetical
           protein T05A10.1j protein.
          Length = 1509

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/38 (26%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +3

Query: 15  LSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQ 125
           + S+ +++EN+ ++Q++ IIQ +     ++TEM+ + +
Sbjct: 725 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 762


>Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical
           protein T05A10.1c protein.
          Length = 1692

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/38 (26%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +3

Query: 15  LSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQ 125
           + S+ +++EN+ ++Q++ IIQ +     ++TEM+ + +
Sbjct: 283 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 320


>AY389810-1|AAR28682.1|  781|Caenorhabditis elegans zinc finger
           transcription factorSMA-9 protein.
          Length = 781

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/38 (26%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +3

Query: 15  LSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQ 125
           + S+ +++EN+ ++Q++ IIQ +     ++TEM+ + +
Sbjct: 305 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 342


>AY389809-1|AAR28681.1|  909|Caenorhabditis elegans zinc finger
           transcription factorSMA-9 protein.
          Length = 909

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/38 (26%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +3

Query: 15  LSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQ 125
           + S+ +++EN+ ++Q++ IIQ +     ++TEM+ + +
Sbjct: 657 VESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQE 694


>AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical
            protein Y110A7A.16 protein.
          Length = 1250

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 9    SVLSSDSKWIENSSKWQSQRIIQIIT 86
            +VLS + +W+EN     SQ I+ +IT
Sbjct: 1146 NVLSENYRWLENIGNELSQLILVLIT 1171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,956,557
Number of Sequences: 27780
Number of extensions: 128134
Number of successful extensions: 436
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)