Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10g06
(318 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) simi... 89 6e-19
At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) simi... 89 8e-19
At1g04030.1 68414.m00390 expressed protein 32 0.072
At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein, A... 32 0.096
At5g50350.1 68418.m06236 expressed protein 29 0.67
At3g48200.1 68416.m05259 expressed protein 27 2.7
At5g56560.1 68418.m07058 F-box family protein contains F-box dom... 27 3.6
At4g37950.1 68417.m05365 expressed protein 27 3.6
At4g01925.1 68417.m00256 DC1 domain-containing protein low simil... 26 4.8
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ... 26 4.8
At1g62720.1 68414.m07079 pentatricopeptide (PPR) repeat-containi... 26 4.8
At3g25950.1 68416.m03234 hypothetical protein 26 6.3
At5g35550.1 68418.m04229 myb family transcription factor (MYB123... 25 8.3
At4g35940.1 68417.m05113 expressed protein 25 8.3
At3g17010.1 68416.m02172 transcriptional factor B3 family protei... 25 8.3
At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal hydrolase-r... 25 8.3
At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal hydrolase-r... 25 8.3
>At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) similar
to 60S ribosomal protein L29 GB:P25886 from (Rattus
norvegicus)
Length = 83
Score = 89.0 bits (211), Expect = 6e-19
Identities = 38/53 (71%), Positives = 45/53 (84%)
Frame = +2
Query: 50 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 208
+MAKSKNHT HNQ+ KAH+NGIKKPR+ RH T GMDPKFLRNQR+ +K N+K
Sbjct: 22 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVK 74
>At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) similar
to ribosomal protein L29 GI:7959366 [Panax ginseng]
Length = 61
Score = 88.6 bits (210), Expect = 8e-19
Identities = 38/52 (73%), Positives = 44/52 (84%)
Frame = +2
Query: 53 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 208
MAKSKNHT HNQ+ KAH+NGIKKPR+ RH T GMDPKFLRNQR+ +K N+K
Sbjct: 1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVK 52
>At1g04030.1 68414.m00390 expressed protein
Length = 418
Score = 32.3 bits (70), Expect = 0.072
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 50 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPK 166
K AKSK T Q++K + N I + R S+ G DP+
Sbjct: 215 KSAKSKGRTKQKQSQKENSNFIADQEEKRDSSSFGTDPQ 253
>At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein,
Arabidopsis thaliana, AJ011845
Length = 400
Score = 31.9 bits (69), Expect = 0.096
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 65 KNHTNHNQNRKAHRNGIKKPRKTRHESTLG 154
KNHT H++ R ++ G K RKT +T G
Sbjct: 88 KNHTFHHKMRMSYSEGSKMKRKTHRNTTFG 117
>At5g50350.1 68418.m06236 expressed protein
Length = 584
Score = 29.1 bits (62), Expect = 0.67
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Frame = +3
Query: 3 RSSVLSSDSKWIENSSKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAWIQNF*GI- 179
+SS ++ D +SSK ++RII+ + K T +S G G + + G+
Sbjct: 282 QSSAVTDDEGKDSSSSKHGTERIIRTVYAQNKATPKKRESLGNSGYGSQRKSLDDNRGVS 341
Query: 180 ---KGFARRVT*SQPSNSRGRLREKLPEKQRPR 269
KG+A ++ S+ R L E + E+QR R
Sbjct: 342 TSTKGYATKLQESE-ERKRELLAEIMLEEQRGR 373
>At3g48200.1 68416.m05259 expressed protein
Length = 1088
Score = 27.1 bits (57), Expect = 2.7
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +2
Query: 47 IKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKP 211
I +A S H+ K H N I T ES G+ + + F + NLKP
Sbjct: 548 IMVATSPYIGPHSFISKTHNNMINLKTSTNAESVFGLPLTAMEYRLFFETSNLKP 602
>At5g56560.1 68418.m07058 F-box family protein contains F-box domain
Pfam:PF00646
Length = 607
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 200 YPSCKTFDSLKILDPCQGWIRAWSSL 123
YP+C F SLK L+ C R W++L
Sbjct: 475 YPACTVFSSLKYLELCTCSAR-WANL 499
>At4g37950.1 68417.m05365 expressed protein
Length = 678
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 45 SSKWQSQ-RIIQIITKTAKLTEMVSKSQGRPGTNPPLAWIQNF*GIKGFARRVT 203
+ WQ++ + Q T+ K+ M + + RPGT AW+ F G + R +T
Sbjct: 408 AGSWQTENKGYQFWTRADKMG-MFTIANVRPGTYSLYAWVSGFIGDYKYVRDIT 460
>At4g01925.1 68417.m00256 DC1 domain-containing protein low
similarity to UV-B light insensitive ULI3 [Arabidopsis
thaliana] GI:17225050; contains Pfam profile PF03107:
DC1 domain
Length = 399
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 113 YHFCELCGFGYDLYDSLTLP 54
YH CE CGF DLY ++ P
Sbjct: 65 YH-CETCGFDVDLYCAMYPP 83
>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 113 YHFCELCGFGYDLYDSLTLPF**VFNP 33
++ C +CGF DL +LTLP + NP
Sbjct: 182 FYRCLICGFCLDLSCALTLPPLTIANP 208
>At1g62720.1 68414.m07079 pentatricopeptide (PPR) repeat-containing
protein contains multiple PPR repeats Pfam Profile:
PF01535
Length = 426
Score = 26.2 bits (55), Expect = 4.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 113 YHFCELCGFGYDLY 72
+H E+CG G+DLY
Sbjct: 33 FHHMEVCGIGHDLY 46
>At3g25950.1 68416.m03234 hypothetical protein
Length = 251
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 154 AKGGFVPGLPWLFDTISVSFAVLVMICMIL 65
A G VP WL + + FA+LV I +L
Sbjct: 205 AADGVVPRWAWLSWLVVIGFAILVSILWVL 234
>At5g35550.1 68418.m04229 myb family transcription factor (MYB123)
contains PFAM profile: myb DNA-binding domain PF00249
Length = 258
Score = 25.4 bits (53), Expect = 8.3
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +2
Query: 65 KNHTNHNQNRKAHRNGIKKPRKTRHES 145
KNH N N ++ + K+P++ +H +
Sbjct: 107 KNHWNSNLRKRLPKTQTKQPKRIKHST 133
>At4g35940.1 68417.m05113 expressed protein
Length = 451
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 192 RRVT*SQPSNSRGRLREKLPEKQRP 266
+R+ QP N R +EK EKQ+P
Sbjct: 230 KRIEKQQPLNGRHNNKEKQKEKQQP 254
>At3g17010.1 68416.m02172 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 302
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 59 KSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKF 169
K K + + +K RN +KK K++ + L P+F
Sbjct: 166 KKKTEDSKSSKKKMTRNKVKKKSKSKSKQVLDGVPEF 202
>At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1147
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 65 KNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPK 166
K+ +N +NR R + HES++ ++PK
Sbjct: 751 KSGSNKKKNRSNKRTSASMSKDDVHESSVNLEPK 784
>At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1121
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 65 KNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPK 166
K+ +N +NR R + HES++ ++PK
Sbjct: 751 KSGSNKKKNRSNKRTSASMSKDDVHESSVNLEPK 784
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,661,111
Number of Sequences: 28952
Number of extensions: 124389
Number of successful extensions: 387
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 340508912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -