Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10g05
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5981| Best HMM Match : No HMM Matches (HMM E-Value=.)               50   5e-07
SB_33077| Best HMM Match : R3H (HMM E-Value=0.38)                      29   1.8  
SB_23254| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   1.8  
SB_2892| Best HMM Match : RasGAP_C (HMM E-Value=0.83)                  29   1.8  
SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09)                 28   2.4  
SB_35067| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_29980| Best HMM Match : E-MAP-115 (HMM E-Value=1.3)                 27   5.6  
SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_4343| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-19)                27   7.4  

>SB_5981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 50.4 bits (115), Expect = 5e-07
 Identities = 19/40 (47%), Positives = 29/40 (72%)
 Frame = +3

Query: 123 EVGRMAMYTSFPVGLFFFFNQPKYFEEWVTNTKRQIFPPE 242
           E   +A+Y  FPV LF++FN P+ +E++V N K QI+PP+
Sbjct: 17  ETSWIAVYVFFPVALFYYFNLPEIYEDYVNNKKGQIYPPD 56


>SB_33077| Best HMM Match : R3H (HMM E-Value=0.38)
          Length = 332

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 210 TNTKRQIFPPENQHDREAIQKLIQDMRKKQ 299
           +NT   + P EN+ D  +I++ + D+RK++
Sbjct: 285 SNTSYGVVPSENKRDLRSIEETLNDIRKRK 314


>SB_23254| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 349

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 256 LSCWFSGGKICLFVFVTHSSKYFGWLKKKNNPTGNDVYIAILP-TSSFQLPIV 101
           ++CW     I   V   H   Y  WL K+   T   V++ +LP  +S   PI+
Sbjct: 272 IACWAPFFIIMFIVQFCHDCVYNSWLTKEAQMTIGTVFVYVLPLLNSAANPII 324


>SB_2892| Best HMM Match : RasGAP_C (HMM E-Value=0.83)
          Length = 333

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 195 FEEWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQMQSLESK*TKFINNI 344
           FEE     K +IF  ENQ +   ++KL +D   +++++L  K  K  N +
Sbjct: 72  FEEREVELKEEIFELENQVETLKLEKLKRDREIERLEALLRKSAKENNRL 121


>SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09)
          Length = 820

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 189 KYFEEWVTNTKRQIFPPENQHDREAIQKLIQDMRKK 296
           K   E   ++ R +  PE QHD EAI++   D+ ++
Sbjct: 620 KIAPEAFNDSARYVNTPETQHDVEAIERFFNDLSQQ 655


>SB_35067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 612

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 206 PFFKIFWLVEKKEQSNRK*CVHSHP 132
           PF K+FW V+KK  S     V  HP
Sbjct: 115 PFMKLFWQVQKKLFSKTSTGVRYHP 139


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 179 QPTKIF*RMGNKYKKTNLPTRKPT**RSDSKINTGYEEETNAKSGIQVNQ 328
           QPT +       YK+TN PT +PT   ++   N    + TN  +    NQ
Sbjct: 200 QPTNL--PPNQPYKQTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQ 247


>SB_29980| Best HMM Match : E-MAP-115 (HMM E-Value=1.3)
          Length = 215

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 186 PKYFEEWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQMQSLES 317
           P  FEEW+    ++    E +  REA QK  ++ RK++ + L +
Sbjct: 158 PLKFEEWMRRKDQEALEREERARREAEQK-YEEKRKRREEVLRA 200


>SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 143 VHIISCWIVLFFQP 184
           + II+CWIV FF+P
Sbjct: 756 LQIINCWIVAFFRP 769


>SB_4343| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-19)
          Length = 898

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 15/58 (25%), Positives = 31/58 (53%)
 Frame = +3

Query: 225 QIFPPENQHDREAIQKLIQDMRKKQMQSLESK*TKFINNII*FLLSNVIKYIMYFKKK 398
           Q F  + +H   A   L+  + K   +++E+  ++   +I+ F+ + + +YI Y KKK
Sbjct: 113 QYFFCKPKHGVFARSALVHALNKSDQEAMEND-SQISPHIVLFIQTRMRRYIKYIKKK 169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,686,333
Number of Sequences: 59808
Number of extensions: 226783
Number of successful extensions: 514
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)