Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10g05
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15590.1 68414.m01874 hypothetical protein                          28   2.0  
At3g44880.1 68416.m04835 Rieske [2Fe-2S] domain-containing prote...    27   3.5  
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea...    27   3.5  
At5g11430.1 68418.m01335 transcription elongation factor-related...    27   6.1  

>At1g15590.1 68414.m01874 hypothetical protein
          Length = 170

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 325 VHLDSRLCICFFLISCINF*IASLSC 248
           V+  +RLC+ F   SCI F  A L C
Sbjct: 124 VYSKTRLCVVFIAFSCIRFAYALLLC 149


>At3g44880.1 68416.m04835 Rieske [2Fe-2S] domain-containing protein
           similar to lethal leaf-spot 1 from Zea mays
           [gi:1935909]; contains Pfam PF00355 Rieske [2Fe-2S]
           domain
          Length = 537

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 100 KLWVIGN*KWVGWLCT 147
           KL ++GN KWV W+C+
Sbjct: 311 KLPIVGNQKWVIWICS 326


>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
           family protein contains Pfam profile:PF00560 Leucine
           Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
           protein kinase domain; Pfam profile:PF00400 WD domain,
           G-beta repeat (7 copies)
          Length = 407

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 103 LWVIGN*KWVGWLCTHHFLLDCSFFSTNQNILKNG 207
           LW IGN  W   L  H   + C  FS +  +L +G
Sbjct: 97  LWKIGNGDWAAELPGHKDSVSCLAFSYDGQLLASG 131


>At5g11430.1 68418.m01335 transcription elongation factor-related
           contains weak similarity to transcription elongation
           factors
          Length = 871

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 19/97 (19%), Positives = 39/97 (40%)
 Frame = +3

Query: 30  DKIFIREKSKYNNLSSENLKINF*TMGNWKLEVGRMAMYTSFPVGLFFFFNQPKYFEEWV 209
           D++F R+   + ++   N  +      +W LEV  +     +  G    F  PK     +
Sbjct: 207 DEVFPRDNVPFTDIIFPNDDLLHGNELSWDLEVSDLGETKDYGTGGEKSFQDPKLLASKI 266

Query: 210 TNTKRQIFPPENQHDREAIQKLIQDMRKKQMQSLESK 320
                ++F   N+  RE  + L+ +++ K    L  +
Sbjct: 267 EMELYKLFGGVNKKYRERGRSLLFNLKDKNNPELRER 303


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,642,863
Number of Sequences: 28952
Number of extensions: 181902
Number of successful extensions: 466
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)