Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10g04
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18240.1 68417.m02709 starch synthase-related protein contain...    29   3.6  
At5g57900.1 68418.m07243 SKP1/ASK1 interacting partner 1 (SKIP1)...    28   4.8  
At5g32621.1 68418.m03884 expressed protein contains Pfam profile...    28   4.8  
At1g69060.1 68414.m07902 expressed protein                             28   4.8  
At1g53200.2 68414.m06029 expressed protein                             28   6.3  
At1g53200.1 68414.m06030 expressed protein                             28   6.3  

>At4g18240.1 68417.m02709 starch synthase-related protein contains
           similarity to starch synthase GI:4582783 from [Vigna
           unguiculata]
          Length = 1040

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 321 VNNLNQPEIVAAMMTKLGESHRRRQIKEKNFHELKEVIVKLFIDVLRLDDATLSA 485
           ++N+  PE+  A+     E     QI +  F EL  +I     ++LRLD+A  +A
Sbjct: 158 LDNITVPEVAKALSLNKSEGE---QISDGQFGELMTMIRSAEKNILRLDEARATA 209


>At5g57900.1 68418.m07243 SKP1/ASK1 interacting partner 1 (SKIP1) /
           SCF (Skp1-cullin-F-box) ubiquitin ligase identical to
           SKP1 interacting partner 1 GI:10716947 from [Arabidopsis
           thaliana], PMID:11387208
          Length = 300

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
 Frame = +3

Query: 63  WGG-DPDV-VNPVSGLTRREIHA----VQKSWAPVNANSFATGSELLRRLFNTYPDT 215
           WGG  P++ +N +S LT +E+      VQKSW  V  + +      L   F++YP++
Sbjct: 8   WGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSYPES 64


>At5g32621.1 68418.m03884 expressed protein contains Pfam profile
           PF04827: Protein of unknown function (DUF635)
          Length = 625

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 134 FLNCVYLSPREPGDRVHHVRIPTPPHVAK 48
           F  CVYL  RE   R+H     TP H+ K
Sbjct: 561 FQACVYLIWRERNSRIHSNNSRTPSHLLK 589


>At1g69060.1 68414.m07902 expressed protein
          Length = 630

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -2

Query: 113 SPREPGDRVHHVRIPTPP-HVAKP 45
           SP  PG RV H R  TPP H   P
Sbjct: 324 SPLSPGIRVEHERFDTPPTHFTSP 347


>At1g53200.2 68414.m06029 expressed protein
          Length = 474

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/96 (16%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
 Frame = +3

Query: 222 YFKMVRKLPEEEYSQNPQFKAHVINLMTSLNLAVNNLNQP-EIVAAMMTKLGE--SHRRR 392
           Y+K   K   +     P      ++ +  + L   ++++  ++V  M  K+ +    R +
Sbjct: 213 YYKEAVKYMRQTLQSPPHVSLAALHPLVQILLIGGHVDEAMKVVEEMCNKIHDVKPFRIK 272

Query: 393 QIKEKNFHELKEVIVKLFIDVLRLDDATLSAWGKTV 500
            +  + FH   +++ K + D+L++D   ++   K +
Sbjct: 273 ALMMEKFHRNSDMLAKCYEDILKIDPCCITTLKKLI 308


>At1g53200.1 68414.m06030 expressed protein
          Length = 613

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/96 (16%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
 Frame = +3

Query: 222 YFKMVRKLPEEEYSQNPQFKAHVINLMTSLNLAVNNLNQP-EIVAAMMTKLGE--SHRRR 392
           Y+K   K   +     P      ++ +  + L   ++++  ++V  M  K+ +    R +
Sbjct: 352 YYKEAVKYMRQTLQSPPHVSLAALHPLVQILLIGGHVDEAMKVVEEMCNKIHDVKPFRIK 411

Query: 393 QIKEKNFHELKEVIVKLFIDVLRLDDATLSAWGKTV 500
            +  + FH   +++ K + D+L++D   ++   K +
Sbjct: 412 ALMMEKFHRNSDMLAKCYEDILKIDPCCITTLKKLI 447


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,295,629
Number of Sequences: 28952
Number of extensions: 293461
Number of successful extensions: 772
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)